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  1. dan ~/pkgbuilds/neuron $ makepkg -s          
  2. ==> Making package: neuron 7.4-1 (Thu Jun  9 23:17:04 CDT 2016)
  3. ==> Checking runtime dependencies...
  4. ==> Checking buildtime dependencies...
  5. ==> Retrieving sources...
  6.   -> Found nrn-7.4.tar.gz
  7. ==> Validating source files with md5sums...
  8.     nrn-7.4.tar.gz ... Passed
  9. ==> Extracting sources...
  10.   -> Extracting nrn-7.4.tar.gz with bsdtar
  11. ==> Removing existing $pkgdir/ directory...
  12. ==> Starting build()...
  13. checking for a BSD-compatible install... /usr/bin/install -c
  14. checking whether build environment is sane... yes
  15. checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
  16. checking for gawk... gawk
  17. checking whether make sets $(MAKE)... yes
  18. checking whether make supports nested variables... yes
  19. checking build system type... x86_64-unknown-linux-gnu
  20. checking host system type... x86_64-unknown-linux-gnu
  21. CYGWIN=no
  22. MINGW=no
  23. checking for style of include used by make... GNU
  24. checking for g++... g++
  25. checking whether the C++ compiler works... yes
  26. checking for C++ compiler default output file name... a.out
  27. checking for suffix of executables...
  28. checking whether we are cross compiling... no
  29. checking for suffix of object files... o
  30. checking whether we are using the GNU C++ compiler... yes
  31. checking whether g++ accepts -g... yes
  32. checking dependency style of g++... gcc3
  33. Not trying to build rpms for your system (use --enable-rpm-rules to override)
  34. checking for gcc... gcc
  35. checking whether we are using the GNU C compiler... yes
  36. checking whether gcc accepts -g... yes
  37. checking for gcc option to accept ISO C89... none needed
  38. checking whether gcc understands -c and -o together... yes
  39. checking dependency style of gcc... gcc3
  40. checking how to run the C preprocessor... gcc -E
  41. checking for gawk... (cached) gawk
  42. checking for flex... flex
  43. checking lex output file root... lex.yy
  44. checking lex library... -lfl
  45. checking whether yytext is a pointer... yes
  46. checking for bison... bison -y
  47. checking whether ln -s works... yes
  48. checking for cos in -lm... yes
  49. Python binary found (/home/dan/.pyenv/shims/python)
  50. checking nrnpython configuration... get_python_version()  '3.5'
  51. sys.version_info[0]  '3'
  52. get_python_inc(0)  '/usr/include/python3.5m'
  53. get_config_var('LIBS')  '-lpthread -ldl  -lutil'
  54. get_config_var('LIBRARY')  'libpython3.5m.a'
  55. get_config_var('LIBDIR')  '/usr/lib'
  56. get_config_var('LIBS')  '-lpthread -ldl  -lutil'
  57. checking if python include files and libraries work... yes
  58. checking for python... python
  59. checking for cython... no
  60. checking for cython... cython
  61. checking for mpicc... mpicc
  62. checking for MPI_Init... yes
  63. checking for mpi.h... yes
  64. checking for mpic++... mpic++
  65. checking for mpi.h... yes
  66. checking how to print strings... printf
  67. checking for a sed that does not truncate output... /usr/bin/sed
  68. checking for grep that handles long lines and -e... /usr/bin/grep
  69. checking for egrep... /usr/bin/grep -E
  70. checking for fgrep... /usr/bin/grep -F
  71. checking for ld used by mpicc... /usr/lib/hardening-wrapper/bin/ld
  72. checking if the linker (/usr/lib/hardening-wrapper/bin/ld) is GNU ld... yes
  73. checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
  74. checking the name lister (/usr/bin/nm -B) interface... BSD nm
  75. checking the maximum length of command line arguments... 1572864
  76. checking whether the shell understands some XSI constructs... yes
  77. checking whether the shell understands "+="... yes
  78. checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
  79. checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
  80. checking for /usr/lib/hardening-wrapper/bin/ld option to reload object files... -r
  81. checking for objdump... objdump
  82. checking how to recognize dependent libraries... pass_all
  83. checking for dlltool... no
  84. checking how to associate runtime and link libraries... printf %s\n
  85. checking for ar... ar
  86. checking for archiver @FILE support... @
  87. checking for strip... strip
  88. checking for ranlib... ranlib
  89. checking command to parse /usr/bin/nm -B output from mpicc object... ok
  90. checking for sysroot... no
  91. checking for mt... no
  92. checking if : is a manifest tool... no
  93. checking for ANSI C header files... yes
  94. checking for sys/types.h... yes
  95. checking for sys/stat.h... yes
  96. checking for stdlib.h... yes
  97. checking for string.h... yes
  98. checking for memory.h... yes
  99. checking for strings.h... yes
  100. checking for inttypes.h... yes
  101. checking for stdint.h... yes
  102. checking for unistd.h... yes
  103. checking for dlfcn.h... yes
  104. checking for objdir... .libs
  105. checking if mpicc supports -fno-rtti -fno-exceptions... no
  106. checking for mpicc option to produce PIC... -fPIC -DPIC
  107. checking if mpicc PIC flag -fPIC -DPIC works... yes
  108. checking if mpicc static flag -static works... no
  109. checking if mpicc supports -c -o file.o... yes
  110. checking if mpicc supports -c -o file.o... (cached) yes
  111. checking whether the mpicc linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
  112. checking whether -lc should be explicitly linked in... no
  113. checking dynamic linker characteristics... GNU/Linux ld.so
  114. checking how to hardcode library paths into programs... immediate
  115. checking for shl_load... no
  116. checking for shl_load in -ldld... no
  117. checking for dlopen... no
  118. checking for dlopen in -ldl... yes
  119. checking whether a program can dlopen itself... yes
  120. checking whether a statically linked program can dlopen itself... yes
  121. checking whether stripping libraries is possible... yes
  122. checking if libtool supports shared libraries... yes
  123. checking whether to build shared libraries... yes
  124. checking whether to build static libraries... no
  125. checking how to run the C++ preprocessor... mpic++ -E
  126. checking for ld used by mpic++... /usr/lib/hardening-wrapper/bin/ld -m elf_x86_64
  127. checking if the linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) is GNU ld... yes
  128. checking whether the mpic++ linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
  129. checking for mpic++ option to produce PIC... -fPIC -DPIC
  130. checking if mpic++ PIC flag -fPIC -DPIC works... yes
  131. checking if mpic++ static flag -static works... no
  132. checking if mpic++ supports -c -o file.o... yes
  133. checking if mpic++ supports -c -o file.o... (cached) yes
  134. checking whether the mpic++ linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
  135. checking dynamic linker characteristics... (cached) GNU/Linux ld.so
  136. checking how to hardcode library paths into programs... immediate
  137. configure: Use the NRNMECH_DLL_STYLE for "special"
  138. checking for tgetent in -lncurses... yes
  139. checking which library has the termcap functions... using libncurses
  140. checking checking compilation with -lreadline... ok
  141. Do not compile neosim specific code.
  142. Not building the nrnjava interface
  143. checking for X... libraries , headers
  144. checking for gethostbyname... yes
  145. checking for connect... yes
  146. checking for remove... yes
  147. checking for shmat... yes
  148. checking for IceConnectionNumber in -lICE... yes
  149. checking for dirent.h that defines DIR... yes
  150. checking for library containing opendir... none required
  151. checking for ANSI C header files... (cached) yes
  152. checking for sys/wait.h that is POSIX.1 compatible... yes
  153. checking fcntl.h usability... yes
  154. checking fcntl.h presence... yes
  155. checking for fcntl.h... yes
  156. checking limits.h usability... yes
  157. checking limits.h presence... yes
  158. checking for limits.h... yes
  159. checking malloc.h usability... yes
  160. checking malloc.h presence... yes
  161. checking for malloc.h... yes
  162. checking sgtty.h usability... yes
  163. checking sgtty.h presence... yes
  164. checking for sgtty.h... yes
  165. checking for strings.h... (cached) yes
  166. checking sys/file.h usability... yes
  167. checking sys/file.h presence... yes
  168. checking for sys/file.h... yes
  169. checking sys/ioctl.h usability... yes
  170. checking sys/ioctl.h presence... yes
  171. checking for sys/ioctl.h... yes
  172. checking sys/time.h usability... yes
  173. checking sys/time.h presence... yes
  174. checking for sys/time.h... yes
  175. checking termio.h usability... yes
  176. checking termio.h presence... yes
  177. checking for termio.h... yes
  178. checking for unistd.h... (cached) yes
  179. checking stdarg.h usability... yes
  180. checking stdarg.h presence... yes
  181. checking for stdarg.h... yes
  182. checking varargs.h usability... no
  183. checking varargs.h presence... no
  184. checking for varargs.h... no
  185. checking stropts.h usability... yes
  186. checking stropts.h presence... yes
  187. checking for stropts.h... yes
  188. checking sys/conf.h usability... no
  189. checking sys/conf.h presence... no
  190. checking for sys/conf.h... no
  191. checking locale.h usability... yes
  192. checking locale.h presence... yes
  193. checking for locale.h... yes
  194. checking fenv.h usability... yes
  195. checking fenv.h presence... yes
  196. checking for fenv.h... yes
  197. checking pthread.h usability... yes
  198. checking pthread.h presence... yes
  199. checking for pthread.h... yes
  200. configure: Using pthreads.
  201. checking for the pthreads library -lpthreads... no
  202. checking whether pthreads work without any flags... yes
  203. checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
  204. checking if more special flags are required for pthreads... no
  205. configure: successful.
  206. PTHREAD_LIBS=
  207. PTHREAD_CFLAGS=
  208. PTHREAD_CC=mpicc
  209. checking float.h usability... yes
  210. checking float.h presence... yes
  211. checking for float.h... yes
  212. checking math.h usability... yes
  213. checking math.h presence... yes
  214. checking for math.h... yes
  215. checking stream.h usability... no
  216. checking stream.h presence... no
  217. checking for stream.h... no
  218. checking for off_t... yes
  219. checking for pid_t... yes
  220. checking for size_t... yes
  221. checking for int64_t... yes
  222. checking whether byte ordering is bigendian... no
  223. checking whether time.h and sys/time.h may both be included... yes
  224. checking whether struct tm is in sys/time.h or time.h... time.h
  225. checking for working alloca.h... yes
  226. checking for alloca... yes
  227. checking for working memcmp... yes
  228. checking return type of signal handlers... void
  229. checking for vprintf... yes
  230. checking for _doprnt... no
  231. checking for ftime... yes
  232. checking for getcwd... yes
  233. checking for getpw... yes
  234. checking for gethostname... yes
  235. checking for gettimeofday... yes
  236. checking for mkdir... yes
  237. checking for putenv... yes
  238. checking for setenv... yes
  239. checking for select... yes
  240. checking for strdup... yes
  241. checking for strstr... yes
  242. checking for index... yes
  243. checking for bzero... yes
  244. checking for bcopy... yes
  245. checking for stty... no
  246. checking for lockf... yes
  247. checking for isatty... yes
  248. checking for mkstemp... yes
  249. checking for setitimer... yes
  250. checking for sigaction... yes
  251. checking for fesetround... yes
  252. checking for posix_memalign... yes
  253. checking for mallinfo... yes
  254. checking if SIGBUS defined in signal.h... yes
  255. checking if SIGSEGV defined in signal.h... yes
  256. checking whether we are using the GNU C++ compiler... (cached) yes
  257. checking whether mpic++ accepts -g... (cached) yes
  258. checking dependency style of mpic++... (cached) gcc3
  259. checking _G_config.h usability... yes
  260. checking _G_config.h presence... yes
  261. checking for _G_config.h... yes
  262. checking whether the compiler implements namespaces... yes
  263. checking whether the compiler has stringstream... yes
  264. Not compiling with interviews.
  265. Building nrniv only with classes that do not depend on InterViews.
  266. The signal function does not need a cast for the handler
  267.  
  268. do SIGPOLL and I_GETSIG work: no
  269.  But see config.log to see why it failed.
  270. checking whether the compiler supports Standard Template Library... yes
  271. NRNOC_X11 = 1
  272. checking that generated files are newer than configure... done
  273. configure: creating ./config.status
  274. config.status: creating Makefile
  275. config.status: creating src/Makefile
  276. config.status: creating src/modlunit/Makefile
  277. config.status: creating src/nmodl/Makefile
  278. config.status: creating nrnrpm.spec
  279. config.status: creating src/sundials/Makefile
  280. config.status: creating src/sundials/shared/Makefile
  281. config.status: creating src/sundials/cvodes/Makefile
  282. config.status: creating src/sundials/ida/Makefile
  283. config.status: creating src/sparse/Makefile
  284. config.status: creating src/memacs/Makefile
  285. config.status: creating src/readline/Makefile
  286. config.status: creating src/sparse13/Makefile
  287. config.status: creating src/Random123/Makefile
  288. config.status: creating src/oc/Makefile
  289. config.status: creating src/scopmath/Makefile
  290. config.status: creating src/nrnoc/Makefile
  291. config.status: creating src/gnu/Makefile
  292. config.status: creating src/uxnrnbbs/Makefile
  293. config.status: creating src/mesch/Makefile
  294. config.status: creating src/uxnrnbbs/mos2nrn.h
  295. config.status: creating src/nrnmpi/Makefile
  296. config.status: creating src/ivoc/Makefile
  297. config.status: creating src/nrncvode/Makefile
  298. config.status: creating src/parallel/Makefile
  299. config.status: creating src/nrniv/Makefile
  300. config.status: creating src/ivos/Makefile
  301. config.status: creating src/ivos/InterViews/Makefile
  302. config.status: creating src/ivos/OS/Makefile
  303. config.status: creating src/nrnjava/Makefile
  304. config.status: creating src/nrnjava/nrnccmb/Makefile
  305. config.status: creating src/nrnjava/neuron/Makefile
  306. config.status: creating src/nrnpython/Makefile
  307. config.status: creating src/ni_pci_6229/Makefile
  308. config.status: creating src/mac/Makefile
  309. config.status: creating src/mswin/Makefile
  310. config.status: creating src/mswin/batch/Makefile
  311. config.status: creating src/mswin/nrnsetup.nsi
  312. config.status: creating src/mswin/nrncygso.sh
  313. config.status: creating src/mswin/lib/mknrndll.mak
  314. config.status: creating src/mswin/nrnsetupmingw.nsi
  315. config.status: creating src/mswin/EnvVarUpdate.nsh
  316. config.status: creating src/mswin/extra/Makefile
  317. config.status: creating src/mswin/rdln/Makefile
  318. config.status: creating src/mswin/windll/Makefile
  319. config.status: creating src/mswin/wnrnbbs/Makefile
  320. config.status: creating src/mswin/lib/Makefile
  321. config.status: creating src/mswin/bin/Makefile
  322. config.status: creating src/neuronmusic/Makefile
  323. config.status: creating src/neuronmusic/setup.py
  324. config.status: creating share/Makefile
  325. config.status: creating bin/nrnoc_makefile
  326. config.status: WARNING:  'bin/nrnoc_makefile.in' seems to ignore the --datarootdir setting
  327. config.status: creating bin/nrniv_makefile
  328. config.status: WARNING:  'bin/nrniv_makefile.in' seems to ignore the --datarootdir setting
  329. config.status: creating bin/nrnmech_makefile
  330. config.status: creating share/lib/Makefile
  331. config.status: creating share/lib/hoc/Makefile
  332. config.status: creating share/lib/python/Makefile
  333. config.status: creating share/lib/hoc/celbild/Makefile
  334. config.status: creating share/lib/hoc/mulfit/Makefile
  335. config.status: creating share/lib/hoc/netbild/Makefile
  336. config.status: creating share/lib/hoc/lincir/Makefile
  337. config.status: creating share/lib/hoc/mview/Makefile
  338. config.status: creating share/lib/hoc/chanbild/Makefile
  339. config.status: creating share/lib/hoc/import3d/Makefile
  340. config.status: creating share/lib/auditscripts/Makefile
  341. config.status: creating share/lib/nrn.defaults
  342. config.status: creating bin/Makefile
  343. config.status: creating bin/nrnocmodl
  344. config.status: creating bin/nrnivmodl
  345. config.status: creating bin/neurondemo
  346. config.status: creating bin/nrngui
  347. config.status: creating bin/bbswork.sh
  348. config.status: creating bin/mos2nrn2.sh
  349. config.status: creating bin/hel2mos1.sh
  350. config.status: creating share/examples/Makefile
  351. config.status: creating share/examples/ivoc/Makefile
  352. config.status: creating share/examples/nrniv/Makefile
  353. config.status: creating share/examples/nrniv/cable/Makefile
  354. config.status: creating share/examples/nrniv/kkin/Makefile
  355. config.status: creating share/examples/nrniv/netcon/Makefile
  356. config.status: creating share/examples/nrniv/netsyn/Makefile
  357. config.status: creating share/examples/nrniv/nmodl/Makefile
  358. config.status: creating share/examples/nrniv/nrnoc/Makefile
  359. config.status: creating share/examples/nrniv/randomsyn/Makefile
  360. config.status: creating share/examples/nrniv/soma/Makefile
  361. config.status: creating share/examples/nrniv/vrecorder/Makefile
  362. config.status: creating share/examples/nrniv/xmech/Makefile
  363. config.status: creating share/demo/Makefile
  364. config.status: creating share/demo/release/Makefile
  365. config.status: creating share/demo/dend3/Makefile
  366. config.status: creating share/demo/sync/Makefile
  367. config.status: creating share/lib/python/neuron/rxd/geometry3d/Makefile
  368. config.status: creating share/lib/python/neuron/Makefile
  369. config.status: creating share/lib/python/neuron/rxd/Makefile
  370. config.status: creating src/nrnpython/setup.py
  371. RefactoringTool: Skipping optional fixer: buffer
  372. RefactoringTool: Skipping optional fixer: idioms
  373. RefactoringTool: Skipping optional fixer: set_literal
  374. RefactoringTool: Skipping optional fixer: ws_comma
  375. RefactoringTool: Refactored src/nrnpython/setup.py
  376. --- src/nrnpython/setup.py  (original)
  377. +++ src/nrnpython/setup.py  (refactored)
  378. @@ -24,10 +24,10 @@
  379.      nrn_srcdir = '../../' + nrn_srcdir
  380.  
  381.  if nrnpython_pyver!=get_python_version():
  382. -    print "Error:"
  383. -    print "NEURON configure time python: "+nrnpython_exec+"  "+ nrnpython_pyver
  384. -    print "Python presently executing setup.py: "+sys.executable+"   "+ get_python_version()
  385. -    print "These do not match, and they should!"
  386. +    print("Error:")
  387. +    print("NEURON configure time python: "+nrnpython_exec+"  "+ nrnpython_pyver)
  388. +    print("Python presently executing setup.py: "+sys.executable+"   "+ get_python_version())
  389. +    print("These do not match, and they should!")
  390.      sys.exit(1)
  391.  
  392.  
  393. @@ -94,7 +94,7 @@
  394.  # specify that the data_files paths are relative to same place as python files
  395.  # from http://stackoverflow.com/questions/1612733/including-non-python-files-with-setup-py
  396.  from distutils.command.install import INSTALL_SCHEMES
  397. -for scheme in INSTALL_SCHEMES.values():
  398. +for scheme in list(INSTALL_SCHEMES.values()):
  399.      scheme['data'] = scheme['purelib']
  400.  
  401.  ext_modules = [hoc_module]
  402. RefactoringTool: Files that were modified:
  403. RefactoringTool: src/nrnpython/setup.py
  404. RefactoringTool: Skipping optional fixer: buffer
  405. RefactoringTool: Skipping optional fixer: idioms
  406. RefactoringTool: Skipping optional fixer: set_literal
  407. RefactoringTool: Skipping optional fixer: ws_comma
  408. RefactoringTool: No changes to share/lib/python/neuron/rxd/geometry3d/setup.py
  409. RefactoringTool: Files that need to be modified:
  410. RefactoringTool: share/lib/python/neuron/rxd/geometry3d/setup.py
  411. config.status: creating share/lib/python/neuron/rxd/geometry3d/setup.py
  412. RefactoringTool: Skipping optional fixer: buffer
  413. RefactoringTool: Skipping optional fixer: idioms
  414. RefactoringTool: Skipping optional fixer: set_literal
  415. RefactoringTool: Skipping optional fixer: ws_comma
  416. RefactoringTool: Refactored src/nrnpython/setup.py
  417. --- src/nrnpython/setup.py  (original)
  418. +++ src/nrnpython/setup.py  (refactored)
  419. @@ -25,8 +25,8 @@
  420.  
  421.  if nrnpython_pyver!=get_python_version():
  422.      print("Error:")
  423. -    print("NEURON configure time python: "+nrnpython_exec+"  "+ nrnpython_pyver)
  424. -    print("Python presently executing setup.py: "+sys.executable+"   "+ get_python_version())
  425. +    print(("NEURON configure time python: "+nrnpython_exec+"  "+ nrnpython_pyver))
  426. +    print(("Python presently executing setup.py: "+sys.executable+"   "+ get_python_version()))
  427.      print("These do not match, and they should!")
  428.      sys.exit(1)
  429.  
  430. RefactoringTool: Files that were modified:
  431. RefactoringTool: src/nrnpython/setup.py
  432. RefactoringTool: Skipping optional fixer: buffer
  433. RefactoringTool: Skipping optional fixer: idioms
  434. RefactoringTool: Skipping optional fixer: set_literal
  435. RefactoringTool: Skipping optional fixer: ws_comma
  436. RefactoringTool: No changes to share/lib/python/neuron/rxd/geometry3d/setup.py
  437. RefactoringTool: Files that need to be modified:
  438. RefactoringTool: share/lib/python/neuron/rxd/geometry3d/setup.py
  439. config.status: creating config.h
  440. config.status: config.h is unchanged
  441. config.status: creating nmodlconf.h
  442. config.status: nmodlconf.h is unchanged
  443. config.status: creating nrnconf.h
  444. config.status: nrnconf.h is unchanged
  445. config.status: creating src/nrnoc/nrnconfigargs.h
  446. config.status: src/nrnoc/nrnconfigargs.h is unchanged
  447. config.status: creating src/oc/nrnmpiuse.h
  448. config.status: src/oc/nrnmpiuse.h is unchanged
  449. config.status: creating src/oc/nrnrtuse.h
  450. config.status: src/oc/nrnrtuse.h is unchanged
  451. config.status: creating src/oc/nrnpthread.h
  452. config.status: src/oc/nrnpthread.h is unchanged
  453. config.status: creating src/parallel/bbsconf.h
  454. config.status: src/parallel/bbsconf.h is unchanged
  455. config.status: creating src/nrnjava/njconf.h
  456. config.status: src/nrnjava/njconf.h is unchanged
  457. config.status: creating src/nrncvode/nrnneosm.h
  458. config.status: src/nrncvode/nrnneosm.h is unchanged
  459. config.status: creating src/ivos/ivstream.h
  460. config.status: src/ivos/ivstream.h is unchanged
  461. config.status: creating src/sundials/sundials_config.h
  462. config.status: src/sundials/sundials_config.h is unchanged
  463. config.status: creating src/nrnpython/nrnpython_config.h
  464. config.status: src/nrnpython/nrnpython_config.h is unchanged
  465. config.status: executing depfiles commands
  466. config.status: executing libtool commands
  467. make  all-recursive
  468. make[1]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4'
  469. Making all in src
  470. make[2]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src'
  471. Making all in memacs
  472. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/memacs'
  473. make[3]: Nothing to be done for 'all'.
  474. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/memacs'
  475. Making all in modlunit
  476. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/modlunit'
  477. make[3]: Nothing to be done for 'all'.
  478. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/modlunit'
  479. Making all in nmodl
  480. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nmodl'
  481. make[3]: Nothing to be done for 'all'.
  482. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nmodl'
  483. Making all in sparse
  484. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/sparse'
  485. make[3]: Nothing to be done for 'all'.
  486. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/sparse'
  487. Making all in sparse13
  488. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/sparse13'
  489. make[3]: Nothing to be done for 'all'.
  490. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/sparse13'
  491. Making all in scopmath
  492. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/scopmath'
  493. make[3]: Nothing to be done for 'all'.
  494. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/scopmath'
  495. Making all in Random123
  496. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/Random123'
  497. make[3]: Nothing to be done for 'all'.
  498. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/Random123'
  499. Making all in nrnmpi
  500. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnmpi'
  501. make[3]: Nothing to be done for 'all'.
  502. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnmpi'
  503. Making all in oc
  504. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/oc'
  505. make  all-am
  506. make[4]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/oc'
  507. make[4]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/oc'
  508. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/oc'
  509. Making all in nrnoc
  510. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnoc'
  511. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  512.     export MODLUNIT ; ../nmodl/nocmodl ./hh )
  513. Translating ./hh.mod into ./hh.c
  514. Thread Safe
  515. sed "s/_reg()/_reg_()/" ./hh.c > hh.tmp
  516. mv hh.tmp ./hh.c
  517. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  518.     export MODLUNIT ; ../nmodl/nocmodl ./feature )
  519. Translating ./feature.mod into ./feature.c
  520. Notice: VERBATIM blocks are not thread safe
  521. sed "s/_reg()/_reg_()/" ./feature.c > feature.tmp
  522. mv feature.tmp ./feature.c
  523. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  524.     export MODLUNIT ; ../nmodl/nocmodl ./passive )
  525. Translating ./passive.mod into ./passive.c
  526. Thread Safe
  527. sed "s/_reg()/_reg_()/" ./passive.c > passive.tmp
  528. mv passive.tmp ./passive.c
  529. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  530.     export MODLUNIT ; ../nmodl/nocmodl ./stim )
  531. Translating ./stim.mod into ./stim.c
  532. Thread Safe
  533. sed "s/_reg()/_reg_()/" ./stim.c > stim.tmp
  534. mv stim.tmp ./stim.c
  535. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  536.     export MODLUNIT ; ../nmodl/nocmodl ./syn )
  537. Translating ./syn.mod into ./syn.c
  538. Thread Safe
  539. sed "s/_reg()/_reg_()/" ./syn.c > syn.tmp
  540. mv syn.tmp ./syn.c
  541. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  542.     export MODLUNIT ; ../nmodl/nocmodl ./vclmp )
  543. Translating ./vclmp.mod into ./vclmp.c
  544. Notice: VERBATIM blocks are not thread safe
  545. Notice: LINEAR is not thread safe.
  546. sed "s/_reg()/_reg_()/" ./vclmp.c > vclmp.tmp
  547. mv vclmp.tmp ./vclmp.c
  548. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  549.     export MODLUNIT ; ../nmodl/nocmodl ./apcount )
  550. Translating ./apcount.mod into ./apcount.c
  551. Thread Safe
  552. sed "s/_reg()/_reg_()/" ./apcount.c > apcount.tmp
  553. mv apcount.tmp ./apcount.c
  554. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  555.     export MODLUNIT ; ../nmodl/nocmodl ./svclmp )
  556. Translating ./svclmp.mod into ./svclmp.c
  557. Thread Safe
  558. sed "s/_reg()/_reg_()/" ./svclmp.c > svclmp.tmp
  559. mv svclmp.tmp ./svclmp.c
  560. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  561.     export MODLUNIT ; ../nmodl/nocmodl ./oclmp )
  562. Translating ./oclmp.mod into ./oclmp.c
  563. Thread Safe
  564. sed "s/_reg()/_reg_()/" ./oclmp.c > oclmp.tmp
  565. mv oclmp.tmp ./oclmp.c
  566. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  567.     export MODLUNIT ; ../nmodl/nocmodl ./xmech )
  568. Translating ./xmech.mod into ./xmech.c
  569. Thread Safe
  570. sed "s/_reg()/_reg_()/" ./xmech.c > xmech.tmp
  571. mv xmech.tmp ./xmech.c
  572. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  573.     export MODLUNIT ; ../nmodl/nocmodl ./netstim )
  574. Translating ./netstim.mod into ./netstim.c
  575. Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
  576. only affects and is affected by discrete events. As such it is not
  577. located in a section and is not associated with an integrator
  578. Thread Safe
  579. sed "s/_reg()/_reg_()/" ./netstim.c > netstim.tmp
  580. mv netstim.tmp ./netstim.c
  581. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  582.     export MODLUNIT ; ../nmodl/nocmodl ./intfire1 )
  583. Translating ./intfire1.mod into ./intfire1.c
  584. Thread Safe
  585. sed "s/_reg()/_reg_()/" ./intfire1.c > intfire1.tmp
  586. mv intfire1.tmp ./intfire1.c
  587. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  588.     export MODLUNIT ; ../nmodl/nocmodl ./intfire2 )
  589. Translating ./intfire2.mod into ./intfire2.c
  590. Thread Safe
  591. sed "s/_reg()/_reg_()/" ./intfire2.c > intfire2.tmp
  592. mv intfire2.tmp ./intfire2.c
  593. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  594.     export MODLUNIT ; ../nmodl/nocmodl ./intfire4 )
  595. Translating ./intfire4.mod into ./intfire4.c
  596. Thread Safe
  597. sed "s/_reg()/_reg_()/" ./intfire4.c > intfire4.tmp
  598. mv intfire4.tmp ./intfire4.c
  599. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  600.     export MODLUNIT ; ../nmodl/nocmodl ./expsyn )
  601. Translating ./expsyn.mod into ./expsyn.c
  602. Thread Safe
  603. sed "s/_reg()/_reg_()/" ./expsyn.c > expsyn.tmp
  604. mv expsyn.tmp ./expsyn.c
  605. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  606.     export MODLUNIT ; ../nmodl/nocmodl ./exp2syn )
  607. Translating ./exp2syn.mod into ./exp2syn.c
  608. Thread Safe
  609. sed "s/_reg()/_reg_()/" ./exp2syn.c > exp2syn.tmp
  610. mv exp2syn.tmp ./exp2syn.c
  611. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  612.     export MODLUNIT ; ../nmodl/nocmodl ./ppmark )
  613. Translating ./ppmark.mod into ./ppmark.c
  614. Thread Safe
  615. sed "s/_reg()/_reg_()/" ./ppmark.c > ppmark.tmp
  616. mv ppmark.tmp ./ppmark.c
  617. (MODLUNIT=../../share/lib/nrnunits.lib ; \
  618.     export MODLUNIT ; ../nmodl/nocmodl ./pattern )
  619. Translating ./pattern.mod into ./pattern.c
  620. Notice: Use of POINTER is not thread safe.
  621. Notice: VERBATIM blocks are not thread safe
  622. Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
  623. only affects and is affected by discrete events. As such it is not
  624. located in a section and is not associated with an integrator
  625. sed "s/_reg()/_reg_()/" ./pattern.c > pattern.tmp
  626. mv pattern.tmp ./pattern.c
  627. if test -d ../../.hg ; then \
  628.     sh ../../hg2nrnversion_h.sh ../.. > ./nrnversion.h.tmp ; \
  629.     if cmp ./nrnversion.h.tmp ./nrnversion.h ; then \
  630.         echo "nrnversion.h not changed" ; \
  631.         rm ./nrnversion.h.tmp ; \
  632.     else \
  633.         mv ./nrnversion.h.tmp ./nrnversion.h ; \
  634.         echo "updated nrnversion.h" ; \
  635.     fi \
  636. else \
  637. if test -d ../../.svn && svnversion ../.. ; then \
  638. if test "`svnversion ../..`" != "`sed -n 's/.*SVN_CHANGESET.*(\([^)]*\).*/\1/p' ./nrnversion.h`" ; then \
  639.     sh ../../svn2nrn_h.sh ../.. > ./nrnversion.h.tmp; \
  640.     if test -s ./nrnversion.h.tmp ; then \
  641.     mv ./nrnversion.h.tmp ./nrnversion.h ; \
  642.     fi ; \
  643.     echo "updated nrnversion.h" ; \
  644. else \
  645.     echo "nrnversion.h not changed" ; \
  646. fi \
  647. fi \
  648. fi
  649. make  all-am
  650. make[4]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnoc'
  651. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT hh.lo -MD -MP -MF .deps/hh.Tpo -c -o hh.lo hh.c
  652. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT hh.lo -MD -MP -MF .deps/hh.Tpo -c hh.c  -fPIC -DPIC -o .libs/hh.o
  653. mv -f .deps/hh.Tpo .deps/hh.Plo
  654. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT feature.lo -MD -MP -MF .deps/feature.Tpo -c -o feature.lo feature.c
  655. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT feature.lo -MD -MP -MF .deps/feature.Tpo -c feature.c  -fPIC -DPIC -o .libs/feature.o
  656. mv -f .deps/feature.Tpo .deps/feature.Plo
  657. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT passive.lo -MD -MP -MF .deps/passive.Tpo -c -o passive.lo passive.c
  658. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT passive.lo -MD -MP -MF .deps/passive.Tpo -c passive.c  -fPIC -DPIC -o .libs/passive.o
  659. mv -f .deps/passive.Tpo .deps/passive.Plo
  660. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT stim.lo -MD -MP -MF .deps/stim.Tpo -c -o stim.lo stim.c
  661. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT stim.lo -MD -MP -MF .deps/stim.Tpo -c stim.c  -fPIC -DPIC -o .libs/stim.o
  662. mv -f .deps/stim.Tpo .deps/stim.Plo
  663. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT syn.lo -MD -MP -MF .deps/syn.Tpo -c -o syn.lo syn.c
  664. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT syn.lo -MD -MP -MF .deps/syn.Tpo -c syn.c  -fPIC -DPIC -o .libs/syn.o
  665. mv -f .deps/syn.Tpo .deps/syn.Plo
  666. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT vclmp.lo -MD -MP -MF .deps/vclmp.Tpo -c -o vclmp.lo vclmp.c
  667. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT vclmp.lo -MD -MP -MF .deps/vclmp.Tpo -c vclmp.c  -fPIC -DPIC -o .libs/vclmp.o
  668. mv -f .deps/vclmp.Tpo .deps/vclmp.Plo
  669. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT apcount.lo -MD -MP -MF .deps/apcount.Tpo -c -o apcount.lo apcount.c
  670. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT apcount.lo -MD -MP -MF .deps/apcount.Tpo -c apcount.c  -fPIC -DPIC -o .libs/apcount.o
  671. mv -f .deps/apcount.Tpo .deps/apcount.Plo
  672. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT svclmp.lo -MD -MP -MF .deps/svclmp.Tpo -c -o svclmp.lo svclmp.c
  673. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT svclmp.lo -MD -MP -MF .deps/svclmp.Tpo -c svclmp.c  -fPIC -DPIC -o .libs/svclmp.o
  674. mv -f .deps/svclmp.Tpo .deps/svclmp.Plo
  675. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT oclmp.lo -MD -MP -MF .deps/oclmp.Tpo -c -o oclmp.lo oclmp.c
  676. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT oclmp.lo -MD -MP -MF .deps/oclmp.Tpo -c oclmp.c  -fPIC -DPIC -o .libs/oclmp.o
  677. mv -f .deps/oclmp.Tpo .deps/oclmp.Plo
  678. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT xmech.lo -MD -MP -MF .deps/xmech.Tpo -c -o xmech.lo xmech.c
  679. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT xmech.lo -MD -MP -MF .deps/xmech.Tpo -c xmech.c  -fPIC -DPIC -o .libs/xmech.o
  680. mv -f .deps/xmech.Tpo .deps/xmech.Plo
  681. if test -d ../../.hg ; then \
  682.     sh ../../hg2nrnversion_h.sh ../.. > ./nrnversion.h.tmp ; \
  683.     if cmp ./nrnversion.h.tmp ./nrnversion.h ; then \
  684.         echo "nrnversion.h not changed" ; \
  685.         rm ./nrnversion.h.tmp ; \
  686.     else \
  687.         mv ./nrnversion.h.tmp ./nrnversion.h ; \
  688.         echo "updated nrnversion.h" ; \
  689.     fi \
  690. else \
  691. if test -d ../../.svn && svnversion ../.. ; then \
  692. if test "`svnversion ../..`" != "`sed -n 's/.*SVN_CHANGESET.*(\([^)]*\).*/\1/p' ./nrnversion.h`" ; then \
  693.     sh ../../svn2nrn_h.sh ../.. > ./nrnversion.h.tmp; \
  694.     if test -s ./nrnversion.h.tmp ; then \
  695.     mv ./nrnversion.h.tmp ./nrnversion.h ; \
  696.     fi ; \
  697.     echo "updated nrnversion.h" ; \
  698. else \
  699.     echo "nrnversion.h not changed" ; \
  700. fi \
  701. fi \
  702. fi
  703. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT netstim.lo -MD -MP -MF .deps/netstim.Tpo -c -o netstim.lo netstim.c
  704. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT netstim.lo -MD -MP -MF .deps/netstim.Tpo -c netstim.c  -fPIC -DPIC -o .libs/netstim.o
  705. mv -f .deps/netstim.Tpo .deps/netstim.Plo
  706. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT intfire1.lo -MD -MP -MF .deps/intfire1.Tpo -c -o intfire1.lo intfire1.c
  707. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT intfire1.lo -MD -MP -MF .deps/intfire1.Tpo -c intfire1.c  -fPIC -DPIC -o .libs/intfire1.o
  708. mv -f .deps/intfire1.Tpo .deps/intfire1.Plo
  709. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT intfire2.lo -MD -MP -MF .deps/intfire2.Tpo -c -o intfire2.lo intfire2.c
  710. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT intfire2.lo -MD -MP -MF .deps/intfire2.Tpo -c intfire2.c  -fPIC -DPIC -o .libs/intfire2.o
  711. mv -f .deps/intfire2.Tpo .deps/intfire2.Plo
  712. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT intfire4.lo -MD -MP -MF .deps/intfire4.Tpo -c -o intfire4.lo intfire4.c
  713. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT intfire4.lo -MD -MP -MF .deps/intfire4.Tpo -c intfire4.c  -fPIC -DPIC -o .libs/intfire4.o
  714. mv -f .deps/intfire4.Tpo .deps/intfire4.Plo
  715. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT expsyn.lo -MD -MP -MF .deps/expsyn.Tpo -c -o expsyn.lo expsyn.c
  716. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT expsyn.lo -MD -MP -MF .deps/expsyn.Tpo -c expsyn.c  -fPIC -DPIC -o .libs/expsyn.o
  717. mv -f .deps/expsyn.Tpo .deps/expsyn.Plo
  718. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT exp2syn.lo -MD -MP -MF .deps/exp2syn.Tpo -c -o exp2syn.lo exp2syn.c
  719. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT exp2syn.lo -MD -MP -MF .deps/exp2syn.Tpo -c exp2syn.c  -fPIC -DPIC -o .libs/exp2syn.o
  720. mv -f .deps/exp2syn.Tpo .deps/exp2syn.Plo
  721. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT ppmark.lo -MD -MP -MF .deps/ppmark.Tpo -c -o ppmark.lo ppmark.c
  722. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT ppmark.lo -MD -MP -MF .deps/ppmark.Tpo -c ppmark.c  -fPIC -DPIC -o .libs/ppmark.o
  723. mv -f .deps/ppmark.Tpo .deps/ppmark.Plo
  724. /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython  -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT pattern.lo -MD -MP -MF .deps/pattern.Tpo -c -o pattern.lo pattern.c
  725. libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -DCABLE=1 -DOOP=1 -I../../src/oc -I../../src/oc -I../../src/scopmath -I../../src/sparse13 -I../../src/nrnmpi -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT pattern.lo -MD -MP -MF .deps/pattern.Tpo -c pattern.c  -fPIC -DPIC -o .libs/pattern.o
  726. mv -f .deps/pattern.Tpo .deps/pattern.Plo
  727. /bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong  -Wl,-O1,--sort-common,--as-needed,-z,relro -o libnrnoc.la -rpath /usr/lib cabcode.lo capac.lo clamp.lo eion.lo extcelln.lo fadvance.lo fstim.lo hh.lo feature.lo init.lo nrnnemo.lo passive.lo passive0.lo point.lo psection.lo solve.lo synapse.lo treeset.lo hoc_init.lo code.lo hoc_oop.lo stim.lo syn.lo vclmp.lo seclist.lo method3.lo apcount.lo hocprax.lo svclmp.lo oclmp.lo xmech.lo secref.lo ldifus.lo hocusr.lo nrnversion.lo netstim.lo intfire1.lo intfire2.lo intfire4.lo expsyn.lo exp2syn.lo ppmark.lo pattern.lo nrntimeout.lo  -lm -ldl
  728. libtool: link: rm -fr  .libs/libnrnoc.la .libs/libnrnoc.lai .libs/libnrnoc.so .libs/libnrnoc.so.0 .libs/libnrnoc.so.0.0.0
  729. libtool: link: mpicc -shared  -fPIC -DPIC  .libs/cabcode.o .libs/capac.o .libs/clamp.o .libs/eion.o .libs/extcelln.o .libs/fadvance.o .libs/fstim.o .libs/hh.o .libs/feature.o .libs/init.o .libs/nrnnemo.o .libs/passive.o .libs/passive0.o .libs/point.o .libs/psection.o .libs/solve.o .libs/synapse.o .libs/treeset.o .libs/hoc_init.o .libs/code.o .libs/hoc_oop.o .libs/stim.o .libs/syn.o .libs/vclmp.o .libs/seclist.o .libs/method3.o .libs/apcount.o .libs/hocprax.o .libs/svclmp.o .libs/oclmp.o .libs/xmech.o .libs/secref.o .libs/ldifus.o .libs/hocusr.o .libs/nrnversion.o .libs/netstim.o .libs/intfire1.o .libs/intfire2.o .libs/intfire4.o .libs/expsyn.o .libs/exp2syn.o .libs/ppmark.o .libs/pattern.o .libs/nrntimeout.o   -lm -ldl  -march=x86-64 -mtune=generic -O2 -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro   -Wl,-soname -Wl,libnrnoc.so.0 -o .libs/libnrnoc.so.0.0.0
  730. libtool: link: (cd ".libs" && rm -f "libnrnoc.so.0" && ln -s "libnrnoc.so.0.0.0" "libnrnoc.so.0")
  731. libtool: link: (cd ".libs" && rm -f "libnrnoc.so" && ln -s "libnrnoc.so.0.0.0" "libnrnoc.so")
  732. libtool: link: ( cd ".libs" && rm -f "libnrnoc.la" && ln -s "../libnrnoc.la" "libnrnoc.la" )
  733. /bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong  -Wl,-O1,--sort-common,--as-needed,-z,relro -o nrnoc ocmain.o nrnnoiv.o ocnoiv.o cprop.o ../oc/modlreg.o libnrnoc.la ../oc/liboc.la ../memacs/libmemacs.la ../scopmath/libscopmath.la ../sparse13/libsparse13.la ../nrnmpi/libnrnmpi.la -lreadline -lncurses  -lm -ldl
  734. libtool: link: mpicc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -o .libs/nrnoc ocmain.o nrnnoiv.o ocnoiv.o cprop.o ../oc/modlreg.o  ./.libs/libnrnoc.so ../oc/.libs/liboc.so ../memacs/.libs/libmemacs.so ../scopmath/.libs/libscopmath.so ../sparse13/.libs/libsparse13.so ../nrnmpi/.libs/libnrnmpi.so -lreadline -lncurses -lm -ldl
  735. make[4]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnoc'
  736. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnoc'
  737. Making all in ivos
  738. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos'
  739. make  all-recursive
  740. make[4]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos'
  741. Making all in InterViews
  742. make[5]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos/InterViews'
  743. make[5]: Nothing to be done for 'all'.
  744. make[5]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos/InterViews'
  745. Making all in OS
  746. make[5]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos/OS'
  747. make[5]: Nothing to be done for 'all'.
  748. make[5]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos/OS'
  749. make[5]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos'
  750. make[5]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos'
  751. make[4]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos'
  752. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/ivos'
  753. Making all in nrnpython
  754. make[3]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnpython'
  755. if test inithoc.cpp -ot ../../src/nrnpython/inithoc.cpp ; then \
  756.     cp ../../src/nrnpython/inithoc.cpp inithoc.cpp ; \
  757. fi
  758. make  all-am
  759. make[4]: Entering directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnpython'
  760. /bin/sh ../../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H  -I. -I../.. -I../../src/nrnoc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials  -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -I. -I../../src/nrniv -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/nrnmpi -I../../src/gnu -I/usr/include/python3.5m -I../../src/ivos  -D_FORTIFY_SOURCE=2  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT nrnpy_hoc.lo -MD -MP -MF .deps/nrnpy_hoc.Tpo -c -o nrnpy_hoc.lo nrnpy_hoc.cpp
  761. libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/nrnoc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -I. -I../../src/nrniv -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/nrnmpi -I../../src/gnu -I/usr/include/python3.5m -I../../src/ivos -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -MT nrnpy_hoc.lo -MD -MP -MF .deps/nrnpy_hoc.Tpo -c nrnpy_hoc.cpp  -fPIC -DPIC -o .libs/nrnpy_hoc.o
  762. In file included from ../../src/gnu/d_vec.h:26:0,
  763.                  from ../../src/gnu/d_avec.h:31,
  764.                  from ../../src/ivoc/ivocvect.h:5,
  765.                  from nrnpy_hoc.cpp:6:
  766. ../../src/gnu/neuron_gnu_builtin.h:77:22: error: 'double abs(double)' conflicts with a previous declaration
  767.  double abs(double arg);
  768.                       ^
  769. In file included from /usr/include/c++/6.1.1/math.h:36:0,
  770.                  from /usr/include/python3.5m/pyport.h:328,
  771.                  from /usr/include/python3.5m/Python.h:50,
  772.                  from ./nrnpython.h:15,
  773.                  from nrnpy_hoc.cpp:1:
  774. /usr/include/c++/6.1.1/cmath:85:3: note: previous declaration 'constexpr double std::abs(double)'
  775.    abs(double __x)
  776.    ^~~
  777. In file included from ../../src/gnu/d_vec.h:26:0,
  778.                  from ../../src/gnu/d_avec.h:31,
  779.                  from ../../src/ivoc/ivocvect.h:5,
  780.                  from nrnpy_hoc.cpp:6:
  781. ../../src/gnu/neuron_gnu_builtin.h:78:20: error: 'float abs(float)' conflicts with a previous declaration
  782.  float abs(float arg);
  783.                     ^
  784. In file included from /usr/include/c++/6.1.1/math.h:36:0,
  785.                  from /usr/include/python3.5m/pyport.h:328,
  786.                  from /usr/include/python3.5m/Python.h:50,
  787.                  from ./nrnpython.h:15,
  788.                  from nrnpy_hoc.cpp:1:
  789. /usr/include/c++/6.1.1/cmath:91:3: note: previous declaration 'constexpr float std::abs(float)'
  790.    abs(float __x)
  791.    ^~~
  792. In file included from ../../src/gnu/d_vec.h:26:0,
  793.                  from ../../src/gnu/d_avec.h:31,
  794.                  from ../../src/ivoc/ivocvect.h:5,
  795.                  from nrnpy_hoc.cpp:6:
  796. ../../src/gnu/neuron_gnu_builtin.h:80:18: error: 'long int abs(long int)' conflicts with a previous declaration
  797.  long abs(long arg);
  798.                   ^
  799. In file included from /usr/include/c++/6.1.1/ext/string_conversions.h:41:0,
  800.                  from /usr/include/c++/6.1.1/bits/basic_string.h:5402,
  801.                  from /usr/include/c++/6.1.1/string:52,
  802.                  from /usr/include/c++/6.1.1/bits/locale_classes.h:40,
  803.                  from /usr/include/c++/6.1.1/bits/ios_base.h:41,
  804.                  from /usr/include/c++/6.1.1/ios:42,
  805.                  from /usr/include/c++/6.1.1/ostream:38,
  806.                  from /usr/include/c++/6.1.1/iostream:39,
  807.                  from ../../src/ivos/ivstrm.h:23,
  808.                  from ../../src/ivos/ivstream.h:11,
  809.                  from ./../../nrnconf.h:362,
  810.                  from ./nrnpython.h:10,
  811.                  from nrnpy_hoc.cpp:1:
  812. /usr/include/c++/6.1.1/cstdlib:172:3: note: previous declaration 'long int std::abs(long int)'
  813.    abs(long __i) { return __builtin_labs(__i); }
  814.    ^~~
  815. Makefile:567: recipe for target 'nrnpy_hoc.lo' failed
  816. make[4]: *** [nrnpy_hoc.lo] Error 1
  817. make[4]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnpython'
  818. Makefile:454: recipe for target 'all' failed
  819. make[3]: *** [all] Error 2
  820. make[3]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src/nrnpython'
  821. Makefile:492: recipe for target 'all-recursive' failed
  822. make[2]: *** [all-recursive] Error 1
  823. make[2]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4/src'
  824. Makefile:628: recipe for target 'all-recursive' failed
  825. make[1]: *** [all-recursive] Error 1
  826. make[1]: Leaving directory '/home/dan/pkgbuilds/neuron/src/nrn-7.4'
  827. Makefile:485: recipe for target 'all' failed
  828. make: *** [all] Error 2
  829. ==> ERROR: A failure occurred in build().
  830.     Aborting...
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