positiwe

SingleR

Oct 8th, 2020 (edited)
166
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  1. Туториал:
  2.  
  3. The actual types per cell are found in sub-list $SingleR.single.main$labels[,1].
  4.  
  5.  
  6. show(names(singler$singler))
  7.  
  8. for (ref.set in names(singler$singler) ) {
  9.   types <- singler$singler[[ref.set]]$SingleR.single.main$labels[,1]
  10.   ovarian <- AddMetaData(ovarian,
  11.                          metadata=types,
  12.                          col.name=paste0(ref.set,"_type" ) )
  13. }
  14. -------------------------------------------------------------------------------------------
  15.  
  16. При теб:
  17.  
  18. show(names(pred.tcells))
  19.  
  20. for (ref.set in names(pred.tcells) ) {
  21.   types <- pred.tcells[[ref.set]]$SingleR.single$labels[,1]
  22.   tcells <- AddMetaData(tcells,
  23.                         metadata=types,
  24.                         col.name=hpca)
  25. }
  26.  
  27.  
  28.  
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