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  1. {
  2. "CN": "CGSB NYC",
  3. "PL": "ILLUMINA",
  4. "PM": "NextSeq 500",
  5. "base input path": "/volume/babylon/brooklyn/alpha/lane/fastq/default/HK2HHAFXX/1/",
  6. "base output path": "/home/lg1883/CUSTOM_DEMUX/HK2HHAFXX/1",
  7. "channel": [
  8. {
  9. "LB": "undetermined",
  10. "PI": "268",
  11. "PU": "HK2HHAFXX:1:undetermined",
  12. "RG": "HK2HHAFXX:1:undetermined",
  13. "output": [
  14. "HK2HHAFXX_l01n01_undetermined.cram"
  15. ],
  16. "undetermined": true
  17. },
  18. {
  19. "LB": "CRQU10",
  20. "PI": "266",
  21. "PU": "HK2HHAFXX:1:TCCCTTGTCTCC",
  22. "RG": "HK2HHAFXX:1:TCCCTTGTCTCC",
  23. "barcode": [
  24. "TCCCTTGTCTCC"
  25. ],
  26. "output": [
  27. "HK2HHAFXX_l01n01.cram"
  28. ]
  29. },
  30. {
  31. "LB": "CRQU14",
  32. "PI": "264",
  33. "PU": "HK2HHAFXX:1:TGGTAGTCTGAA",
  34. "RG": "HK2HHAFXX:1:TGGTAGTCTGAA",
  35. "barcode": [
  36. "TGGTAGTCTGAA"
  37. ],
  38. "output": [
  39. "HK2HHAFXX_l01n01.cram"
  40. ]
  41. },
  42. {
  43. "LB": "CRBX4",
  44. "PI": "274",
  45. "PU": "HK2HHAFXX:1:GCATGTCGAAAT",
  46. "RG": "HK2HHAFXX:1:GCATGTCGAAAT",
  47. "barcode": [
  48. "GCATGTCGAAAT"
  49. ],
  50. "output": [
  51. "HK2HHAFXX_l01n01.cram"
  52. ]
  53. },
  54. {
  55. "LB": "CRBX8",
  56. "PI": "276",
  57. "PU": "HK2HHAFXX:1:CCTATGCACGGT",
  58. "RG": "HK2HHAFXX:1:CCTATGCACGGT",
  59. "barcode": [
  60. "CCTATGCACGGT"
  61. ],
  62. "output": [
  63. "HK2HHAFXX_l01n01.cram"
  64. ]
  65. },
  66. {
  67. "LB": "CRBX12",
  68. "PI": "275",
  69. "PU": "HK2HHAFXX:1:GCGTGGTCATTA",
  70. "RG": "HK2HHAFXX:1:GCGTGGTCATTA",
  71. "barcode": [
  72. "GCGTGGTCATTA"
  73. ],
  74. "output": [
  75. "HK2HHAFXX_l01n01.cram"
  76. ]
  77. },
  78. {
  79. "LB": "CRBX16",
  80. "PI": "268",
  81. "PU": "HK2HHAFXX:1:AGTCACATCCGC",
  82. "RG": "HK2HHAFXX:1:AGTCACATCCGC",
  83. "barcode": [
  84. "AGTCACATCCGC"
  85. ],
  86. "output": [
  87. "HK2HHAFXX_l01n01.cram"
  88. ]
  89. },
  90. {
  91. "LB": "CRM3",
  92. "PI": "286",
  93. "PU": "HK2HHAFXX:1:AGCGTCTGAACT",
  94. "RG": "HK2HHAFXX:1:AGCGTCTGAACT",
  95. "barcode": [
  96. "AGCGTCTGAACT"
  97. ],
  98. "output": [
  99. "HK2HHAFXX_l01n01.cram"
  100. ]
  101. },
  102. {
  103. "LB": "CRM7",
  104. "PI": "260",
  105. "PU": "HK2HHAFXX:1:ATCGCGACTGCT",
  106. "RG": "HK2HHAFXX:1:ATCGCGACTGCT",
  107. "barcode": [
  108. "ATCGCGACTGCT"
  109. ],
  110. "output": [
  111. "HK2HHAFXX_l01n01.cram"
  112. ]
  113. },
  114. {
  115. "LB": "CRM11",
  116. "PI": "275",
  117. "PU": "HK2HHAFXX:1:TGGAGGTTCTCA",
  118. "RG": "HK2HHAFXX:1:TGGAGGTTCTCA",
  119. "barcode": [
  120. "TGGAGGTTCTCA"
  121. ],
  122. "output": [
  123. "HK2HHAFXX_l01n01.cram"
  124. ]
  125. },
  126. {
  127. "LB": "CRQU1",
  128. "PI": "273",
  129. "PU": "HK2HHAFXX:1:TGCTTGTAGGCA",
  130. "RG": "HK2HHAFXX:1:TGCTTGTAGGCA",
  131. "barcode": [
  132. "TGCTTGTAGGCA"
  133. ],
  134. "output": [
  135. "HK2HHAFXX_l01n01.cram"
  136. ]
  137. },
  138. {
  139. "LB": "CRQU4",
  140. "PI": "270",
  141. "PU": "HK2HHAFXX:1:CTTAAATGGGCA",
  142. "RG": "HK2HHAFXX:1:CTTAAATGGGCA",
  143. "barcode": [
  144. "CTTAAATGGGCA"
  145. ],
  146. "output": [
  147. "HK2HHAFXX_l01n01.cram"
  148. ]
  149. },
  150. {
  151. "LB": "CRQU7",
  152. "PI": "273",
  153. "PU": "HK2HHAFXX:1:GGTATCACCCTG",
  154. "RG": "HK2HHAFXX:1:GGTATCACCCTG",
  155. "barcode": [
  156. "GGTATCACCCTG"
  157. ],
  158. "output": [
  159. "HK2HHAFXX_l01n01.cram"
  160. ]
  161. },
  162. {
  163. "LB": "CRQU11",
  164. "PI": "271",
  165. "PU": "HK2HHAFXX:1:CGCCTTGATAAG",
  166. "RG": "HK2HHAFXX:1:CGCCTTGATAAG",
  167. "barcode": [
  168. "CGCCTTGATAAG"
  169. ],
  170. "output": [
  171. "HK2HHAFXX_l01n01.cram"
  172. ]
  173. },
  174. {
  175. "LB": "CRBX1",
  176. "PI": "270",
  177. "PU": "HK2HHAFXX:1:CGTTTATCCGTT",
  178. "RG": "HK2HHAFXX:1:CGTTTATCCGTT",
  179. "barcode": [
  180. "CGTTTATCCGTT"
  181. ],
  182. "output": [
  183. "HK2HHAFXX_l01n01.cram"
  184. ]
  185. },
  186. {
  187. "LB": "CRBX5",
  188. "PI": "262",
  189. "PU": "HK2HHAFXX:1:TTGTACTCACTC",
  190. "RG": "HK2HHAFXX:1:TTGTACTCACTC",
  191. "barcode": [
  192. "TTGTACTCACTC"
  193. ],
  194. "output": [
  195. "HK2HHAFXX_l01n01.cram"
  196. ]
  197. },
  198. {
  199. "LB": "CRBX13",
  200. "PI": "266",
  201. "PU": "HK2HHAFXX:1:ACGAGACTGATT",
  202. "RG": "HK2HHAFXX:1:ACGAGACTGATT",
  203. "barcode": [
  204. "ACGAGACTGATT"
  205. ],
  206. "output": [
  207. "HK2HHAFXX_l01n01.cram"
  208. ]
  209. },
  210. {
  211. "LB": "CRBX17",
  212. "PI": "275",
  213. "PU": "HK2HHAFXX:1:GCTGTACGGATT",
  214. "RG": "HK2HHAFXX:1:GCTGTACGGATT",
  215. "barcode": [
  216. "GCTGTACGGATT"
  217. ],
  218. "output": [
  219. "HK2HHAFXX_l01n01.cram"
  220. ]
  221. },
  222. {
  223. "LB": "CRM4",
  224. "PI": "279",
  225. "PU": "HK2HHAFXX:1:ATCACCAGGTGT",
  226. "RG": "HK2HHAFXX:1:ATCACCAGGTGT",
  227. "barcode": [
  228. "ATCACCAGGTGT"
  229. ],
  230. "output": [
  231. "HK2HHAFXX_l01n01.cram"
  232. ]
  233. },
  234. {
  235. "LB": "CRM8",
  236. "PI": "273",
  237. "PU": "HK2HHAFXX:1:TGGTCAACGATA",
  238. "RG": "HK2HHAFXX:1:TGGTCAACGATA",
  239. "barcode": [
  240. "TGGTCAACGATA"
  241. ],
  242. "output": [
  243. "HK2HHAFXX_l01n01.cram"
  244. ]
  245. },
  246. {
  247. "LB": "CRQU2",
  248. "PI": "274",
  249. "PU": "HK2HHAFXX:1:ATCGCACAGTAA",
  250. "RG": "HK2HHAFXX:1:ATCGCACAGTAA",
  251. "barcode": [
  252. "ATCGCACAGTAA"
  253. ],
  254. "output": [
  255. "HK2HHAFXX_l01n01.cram"
  256. ]
  257. },
  258. {
  259. "LB": "CRQU5",
  260. "PI": "275",
  261. "PU": "HK2HHAFXX:1:GTCGTGTAGCCT",
  262. "RG": "HK2HHAFXX:1:GTCGTGTAGCCT",
  263. "barcode": [
  264. "GTCGTGTAGCCT"
  265. ],
  266. "output": [
  267. "HK2HHAFXX_l01n01.cram"
  268. ]
  269. },
  270. {
  271. "LB": "CRQU8",
  272. "PI": "268",
  273. "PU": "HK2HHAFXX:1:AGCGGAGGTTAG",
  274. "RG": "HK2HHAFXX:1:AGCGGAGGTTAG",
  275. "barcode": [
  276. "AGCGGAGGTTAG"
  277. ],
  278. "output": [
  279. "HK2HHAFXX_l01n01.cram"
  280. ]
  281. },
  282. {
  283. "LB": "CRQU12",
  284. "PI": "271",
  285. "PU": "HK2HHAFXX:1:TACAGCGCATAC",
  286. "RG": "HK2HHAFXX:1:TACAGCGCATAC",
  287. "barcode": [
  288. "TACAGCGCATAC"
  289. ],
  290. "output": [
  291. "HK2HHAFXX_l01n01.cram"
  292. ]
  293. },
  294. {
  295. "LB": "CRBX2",
  296. "PI": "275",
  297. "PU": "HK2HHAFXX:1:AATTGTGTCGGA",
  298. "RG": "HK2HHAFXX:1:AATTGTGTCGGA",
  299. "barcode": [
  300. "AATTGTGTCGGA"
  301. ],
  302. "output": [
  303. "HK2HHAFXX_l01n01.cram"
  304. ]
  305. },
  306. {
  307. "LB": "CRBX6",
  308. "PI": "269",
  309. "PU": "HK2HHAFXX:1:TGCATACACTGG",
  310. "RG": "HK2HHAFXX:1:TGCATACACTGG",
  311. "barcode": [
  312. "TGCATACACTGG"
  313. ],
  314. "output": [
  315. "HK2HHAFXX_l01n01.cram"
  316. ]
  317. },
  318. {
  319. "LB": "CRBX10",
  320. "PI": "277",
  321. "PU": "HK2HHAFXX:1:AGTCGAACGAGG",
  322. "RG": "HK2HHAFXX:1:AGTCGAACGAGG",
  323. "barcode": [
  324. "AGTCGAACGAGG"
  325. ],
  326. "output": [
  327. "HK2HHAFXX_l01n01.cram"
  328. ]
  329. },
  330. {
  331. "LB": "CRBX14",
  332. "PI": "284",
  333. "PU": "HK2HHAFXX:1:ACCAGTGACTCA",
  334. "RG": "HK2HHAFXX:1:ACCAGTGACTCA",
  335. "barcode": [
  336. "ACCAGTGACTCA"
  337. ],
  338. "output": [
  339. "HK2HHAFXX_l01n01.cram"
  340. ]
  341. },
  342. {
  343. "LB": "CRM1",
  344. "PI": "265",
  345. "PU": "HK2HHAFXX:1:GAATACCAAGTC",
  346. "RG": "HK2HHAFXX:1:GAATACCAAGTC",
  347. "barcode": [
  348. "GAATACCAAGTC"
  349. ],
  350. "output": [
  351. "HK2HHAFXX_l01n01.cram"
  352. ]
  353. },
  354. {
  355. "LB": "CRM5",
  356. "PI": "271",
  357. "PU": "HK2HHAFXX:1:GTAGATCGTGTA",
  358. "RG": "HK2HHAFXX:1:GTAGATCGTGTA",
  359. "barcode": [
  360. "GTAGATCGTGTA"
  361. ],
  362. "output": [
  363. "HK2HHAFXX_l01n01.cram"
  364. ]
  365. },
  366. {
  367. "LB": "CRM9",
  368. "PI": "264",
  369. "PU": "HK2HHAFXX:1:TAACGTGTGTGC",
  370. "RG": "HK2HHAFXX:1:TAACGTGTGTGC",
  371. "barcode": [
  372. "TAACGTGTGTGC"
  373. ],
  374. "output": [
  375. "HK2HHAFXX_l01n01.cram"
  376. ]
  377. },
  378. {
  379. "LB": "CRQU3",
  380. "PI": "268",
  381. "PU": "HK2HHAFXX:1:CATTATGGCGTG",
  382. "RG": "HK2HHAFXX:1:CATTATGGCGTG",
  383. "barcode": [
  384. "CATTATGGCGTG"
  385. ],
  386. "output": [
  387. "HK2HHAFXX_l01n01.cram"
  388. ]
  389. },
  390. {
  391. "LB": "CRQU6",
  392. "PI": "274",
  393. "PU": "HK2HHAFXX:1:CCAATACGCCTG",
  394. "RG": "HK2HHAFXX:1:CCAATACGCCTG",
  395. "barcode": [
  396. "CCAATACGCCTG"
  397. ],
  398. "output": [
  399. "HK2HHAFXX_l01n01.cram"
  400. ]
  401. },
  402. {
  403. "LB": "CRQU9",
  404. "PI": "273",
  405. "PU": "HK2HHAFXX:1:GATCTGCGATCC",
  406. "RG": "HK2HHAFXX:1:GATCTGCGATCC",
  407. "barcode": [
  408. "GATCTGCGATCC"
  409. ],
  410. "output": [
  411. "HK2HHAFXX_l01n01.cram"
  412. ]
  413. },
  414. {
  415. "LB": "CRQU13",
  416. "PI": "273",
  417. "PU": "HK2HHAFXX:1:CAGCTCATCAGC",
  418. "RG": "HK2HHAFXX:1:CAGCTCATCAGC",
  419. "barcode": [
  420. "CAGCTCATCAGC"
  421. ],
  422. "output": [
  423. "HK2HHAFXX_l01n01.cram"
  424. ]
  425. },
  426. {
  427. "LB": "CRBX3",
  428. "PI": "271",
  429. "PU": "HK2HHAFXX:1:CAAACAACAGCT",
  430. "RG": "HK2HHAFXX:1:CAAACAACAGCT",
  431. "barcode": [
  432. "CAAACAACAGCT"
  433. ],
  434. "output": [
  435. "HK2HHAFXX_l01n01.cram"
  436. ]
  437. },
  438. {
  439. "LB": "CRBX7",
  440. "PI": "269",
  441. "PU": "HK2HHAFXX:1:GCAACACCATCC",
  442. "RG": "HK2HHAFXX:1:GCAACACCATCC",
  443. "barcode": [
  444. "GCAACACCATCC"
  445. ],
  446. "output": [
  447. "HK2HHAFXX_l01n01.cram"
  448. ]
  449. },
  450. {
  451. "LB": "CRBX11",
  452. "PI": "261",
  453. "PU": "HK2HHAFXX:1:CGAGCAATCCTA",
  454. "RG": "HK2HHAFXX:1:CGAGCAATCCTA",
  455. "barcode": [
  456. "CGAGCAATCCTA"
  457. ],
  458. "output": [
  459. "HK2HHAFXX_l01n01.cram"
  460. ]
  461. },
  462. {
  463. "LB": "CRBX15",
  464. "PI": "266",
  465. "PU": "HK2HHAFXX:1:AGTCGTGCACAT",
  466. "RG": "HK2HHAFXX:1:AGTCGTGCACAT",
  467. "barcode": [
  468. "AGTCGTGCACAT"
  469. ],
  470. "output": [
  471. "HK2HHAFXX_l01n01.cram"
  472. ]
  473. },
  474. {
  475. "LB": "CRM2",
  476. "PI": "240",
  477. "PU": "HK2HHAFXX:1:GTATCTGCGCGT",
  478. "RG": "HK2HHAFXX:1:GTATCTGCGCGT",
  479. "barcode": [
  480. "GTATCTGCGCGT"
  481. ],
  482. "output": [
  483. "HK2HHAFXX_l01n01.cram"
  484. ]
  485. },
  486. {
  487. "LB": "CRM6",
  488. "PI": "269",
  489. "PU": "HK2HHAFXX:1:CGAGGGAAAGTC",
  490. "RG": "HK2HHAFXX:1:CGAGGGAAAGTC",
  491. "barcode": [
  492. "CGAGGGAAAGTC"
  493. ],
  494. "output": [
  495. "HK2HHAFXX_l01n01.cram"
  496. ]
  497. },
  498. {
  499. "LB": "CRM10",
  500. "PI": "268",
  501. "PU": "HK2HHAFXX:1:CAAATTCGGGAT",
  502. "RG": "HK2HHAFXX:1:CAAATTCGGGAT",
  503. "barcode": [
  504. "CAAATTCGGGAT"
  505. ],
  506. "output": [
  507. "HK2HHAFXX_l01n01.cram"
  508. ]
  509. }
  510. ],
  511. "confidence": 0.99,
  512. "decoder": "pamld",
  513. "include filtered": false,
  514. "input": [
  515. "HK2HHAFXX_l01n01.3310000008d4fd.fastq.gz",
  516. "HK2HHAFXX_l01n02.3320000008d4fa.fastq.gz",
  517. "HK2HHAFXX_l01n03.3330000008d4f7.fastq.gz"
  518. ],
  519. "multiplex barcode": [
  520. "~2"
  521. ],
  522. "noise": 0.15,
  523. "template": [
  524. "0",
  525. "1"
  526. ],
  527. "threads": 16,
  528. "token": [
  529. "0:0:",
  530. "2:0:",
  531. "1:0:12"
  532. ]
  533. }
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