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- # Maintainer: Athemis <alexander.minges[at]googlemail[dot]com>
- pkgname=bowtie
- pkgver=1.1.1
- pkgrel=1
- pkgdesc="Bowtie is an alignment tool for short nucleotide sequences against long templates"
- url="http://bowtie-bio.sf.net"
- arch=('x86_64' 'i686')
- license=('PerlArtistic')
- depends=()
- source=("http://downloads.sourceforge.net/bowtie-bio/${pkgname}-${pkgver}-src.zip"
- "makefile_uname.patch")
- sha256sums=('92aacb2d32065ebee433ce76eff673c24ed12591eb6c20e22ad7e4a790c48f72'
- '6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3')
- build() {
- cd "${srcdir}/${pkgname}-${pkgver}"
- patch -Np0 -i ../makefile_uname.patch
- make
- }
- package() {
- cd "${srcdir}/${pkgname}-${pkgver}"
- install -d ${pkgdir}/usr/bin
- install -d ${pkgdir}/usr/share/doc/${pkgname}
- install -Dm755 bowtie ${pkgdir}/usr/bin
- install -Dm755 bowtie-build* ${pkgdir}/usr/bin
- install -Dm755 bowtie-inspect* ${pkgdir}/usr/bin
- install -Dm755 bowtie-align* ${pkgdir}/usr/bin
- install -Dm755 scripts/* ${pkgdir}/usr/bin
- install -Dm644 doc/* ${pkgdir}/usr/share/doc/${pkgname}
- install -Dm644 TUTORIAL "${pkgdir}/usr/share/doc/${pkgname}/TUTORIAL"
- install -Dm644 MANUAL "$pkgdir/usr/share/doc/$pkgname/MANUAL"
- install -Dm644 MANUAL.markdown "$pkgdir/usr/share/doc/$pkgname/MANUAL.markdown"
- install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
- }
- # vim:set ts=2 sw=2 et:
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