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Leonardo_bar Jun 21st, 2018 49 Never
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  1. ERROR) syntax error
  2. atomselect: cannot parse selection text: all and not ()
  3. can't read "babbeo": no such variable
  4. residues.dat
  5. file5
  6. can't read "noah": no such variable
  7. Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
  8. Info) Exiting normally.
  9. vmd > Could not find/open font when opening font "arial", using internal non-scalable font
  10. rm: cannot remove `res-rmsd.tcl': No such file or directory
  11. mv: cannot stat `*-rmsd.dat': No such file or directory
  12.  
  13.  MD analysis completed in background
  14.  The RMSD per residue plots are stored in Analysis_Dyna/Images
  15.  
  16.  Now Analysis_MD.sh will terminate
  17.  If MD was OK, run new2mins.sh to go on, otherwise re-run DynIt.sh with a different setup
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