... output truncated at 500 lines ...
2020-02-04 10:41:30,213 DEBUG: Undistorting image 100_0001_0090.JPG
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[INFO]    running /usr/bin/env python2 /code/SuperBuild/src/opensfm/bin/opensfm export_visualsfm --points "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm"
[INFO]    running /usr/bin/env python2 /code/SuperBuild/src/opensfm/bin/opensfm export_ply --no-cameras "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm"
[INFO]    running /usr/bin/env python2 /code/SuperBuild/src/opensfm/bin/opensfm export_geocoords --transformation --proj '+proj=utm +zone=32 +datum=WGS84 +units=m +no_defs +type=crs' "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm"
[INFO]    Finished opensfm stage
[INFO]    Running odm_filterpoints stage
[INFO]    Filtering point cloud (statistical, meanK 16, standard deviation 2.5)
[INFO]    running /code/build/bin/odm_filterpoints -inputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm/reconstruction.ply -outputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_filterpoints/point_cloud.ply -sd 2.5 -meank 16 -sample 0
[INFO]    Finished odm_filterpoints stage
[INFO]    Running odm_meshing stage
[INFO]    Writing ODM 2.5D Mesh file in: /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/odm_25dmesh.ply
[WARNING] Maximum resolution set to GSD - 10.0% (6.58 cm / pixel, requested resolution was 5.0 cm / pixel)
[INFO]    ODM 2.5D DSM resolution: 0.4817102468629562
[INFO]    Created temporary directory: /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp
[INFO]    Creating DSM for 2.5D mesh
[INFO]    running pdal info /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_filterpoints/point_cloud.ply > /tmp/tmpN7ZtfG.json
[INFO]    Point cloud bounds are [minx: -361.3727722, maxx: 373.4052124] [miny: -406.90979, maxy: 381.7778931]
[INFO]    DEM resolution is (1638, 1526), max tile size is 4096, will split DEM generation into 1 tiles
[INFO]    Generating /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/mesh_dsm_r1.3624823284953689_x0_y0.tif (max, radius: 1.3624823284953689, resolution: 0.4817102468629562)
[INFO]    running pdal pipeline -i /tmp/tmpDJr6cs.json > /dev/null 2>&1
[INFO]    running gdalbuildvrt "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.vrt" "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/mesh_dsm_r1.3624823284953689_x0_y0.tif"
0...10...20...30...40...50...60...70...80...90...100 - done.
[INFO]    running gdal_translate -co NUM_THREADS=2 --config GDAL_CACHEMAX 47.4% /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.vrt /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.tmp.tif
Input file size is 1526, 1638
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[INFO]    running gdal_translate -co NUM_THREADS=2 --config GDAL_CACHEMAX 47.4% -outsize 10% 0 /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.tmp.tif /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.small.tif
Input file size is 1526, 1638
0
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[INFO]    running gdal_fillnodata.py -co NUM_THREADS=2 --config GDAL_CACHEMAX 47.4% -b 1 -of GTiff /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.small.tif /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.small_filled.tif
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[INFO]    running gdalbuildvrt -resolution highest -r bilinear "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/merged.vrt" "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.small_filled.tif" "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.tmp.tif"
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[INFO]    running gdal_translate -co NUM_THREADS=2 --config GDAL_CACHEMAX 47.4% /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/merged.vrt /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/tiles.tif
Input file size is 1526, 1638
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[INFO]    Completed mesh_dsm.tif in 0:00:02.123182
[INFO]    Sampling points from DSM: /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/mesh_dsm.tif
[INFO]    running /code/SuperBuild/src/dem2points/dem2points -inputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/mesh_dsm.tif -outputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/dsm_points.ply -skirtHeightThreshold 1.5 -skirtIncrements 0.2 -skirtHeightCap 100
[INFO]    running /code/SuperBuild/src/PoissonRecon/Bin/Linux/PoissonRecon --in /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/tmp/dsm_points.ply --out /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/odm_25dmesh.dirty.ply --depth 11 --pointWeight 4 --samplesPerNode 1.0 --threads 1 --linearFit
[WARNING] Bad average root: -0.000000
(0.500128 0.441985) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.300278) (0.500128)
[WARNING] Bad average root: 1.000000
(0.500119 0.500128) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.498849) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.495018) (0.500128)
[WARNING] Bad average root: 1.000000
(0.500115 0.500128) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.499928) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.499963) (0.500128)
[WARNING] Bad average root: 1.000000
(0.401593 0.500128) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.421346) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.255292) (0.500128)
[WARNING] Bad average root: 1.000000
(0.498333 0.500128) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.156757) (0.500128)
[WARNING] Bad average root: 1.000000
(0.499542 0.500128) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.500071) (0.500128)
[WARNING] Bad average root: -0.000000
(0.500128 0.499677) (0.500128)
[WARNING] Bad average root: 1.000000
(0.499674 0.500128) (0.500128)
[INFO]    running /code/build/bin/odm_cleanmesh -inputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/odm_25dmesh.dirty.ply -outputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/odm_25dmesh.ply -removeIslands -decimateMesh 200000
[INFO]    Finished odm_meshing stage
[INFO]    Running mvs_texturing stage
[INFO]    Writing MVS Textured file in: /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_texturing_25d/odm_textured_model.obj
[INFO]    running /code/SuperBuild/install/bin/texrecon /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm/undistorted/reconstruction.nvm /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_meshing/odm_25dmesh.ply /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_texturing_25d/odm_textured_model -d gmi -o gauss_clamping -t none      --nadir_mode -n 65535
/code/SuperBuild/install/bin/texrecon (built on Feb  4 2020, 08:17:14)
Load and prepare mesh:
PLY Loader: comment VTK generated PLY File
Reading PLY: 195153 verts...
395404 faces...
done.
Warning: Zero-length normals detected: 198 face normals, 3 vertex normals
Generating texture views:
NVM: Loading file...
NVM: Number of views: 231
NVM: Number of features: 225290
Loading 100%... done. (Took 8.33s)
Building adjacency graph:
Adding edges 100%... done. (Took 0.77s)
599751 total edges.
View selection:
Building BVH from 395404 faces...
done. (Took: 440 ms)
Calculating face qualities 100%... done. (Took 25.084s)
Postprocessing face infos 100%... done. (Took 1.51s)
Maximum quality of a face within an image: 3169.23
Clamping qualities to 307.763 within normalization.
Writing data cost file...
done.
Optimizing:
Time[s]	Energy
0	411340
3	407667
4	399616
5	395277
5	393491
6	392473
7	391902
8	391297
9	390970
10	390728
10	390609
11	390520
11	390446
12	390366
12	390316
85186 faces have not been seen
Took: 40.963s
Generating texture patches:
Running...
done. (Took 9.639s)
17157 texture patches.
Running global seam leveling:
Create matrices for optimization...
done.
Lhs dimensionality: 219171 x 219171
Calculating adjustments:
Color channel 0: CG took 105 iterations. Residual is 8.52254e-05
Color channel 2: CG took 105 iterations. Residual is 8.49978e-05
Color channel 1: CG took 105 iterations. Residual is 8.63547e-05
Took 0.926 seconds
Adjusting texture patches 100%... done. (Took 4.76s)
Running local seam leveling:
Blending texture patches 100%... done. (Took 105.114s)
Generating texture atlases:
Sorting texture patches...
done.
Working on atlas 88 100%... done.
Finalizing texture atlases...
done. (Took: 38.512s)
Building objmodel:
Saving model...
done.
Whole texturing procedure took: 238.951s
[INFO]    Finished mvs_texturing stage
[INFO]    Running odm_georeferencing stage
[INFO]    Running georeferencing with OpenSfM transformation matrix
[INFO]    running /code/build/bin/odm_georef -bundleFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm/bundle_r000.out -inputTransformFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/opensfm/geocoords_transformation.txt -inputCoordFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/coords.txt -inputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_texturing_25d/odm_textured_model.obj -outputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_texturing_25d/odm_textured_model_geo.obj -inputPointCloudFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_filterpoints/point_cloud.ply -outputPointCloudFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.laz -outputPointCloudSrs '+proj=utm +zone=32 +datum=WGS84 +units=m +no_defs +type=crs'  -logFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing_25d/odm_georeferencing_log.txt -outputTransformFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing_25d/odm_georeferencing_transform.txt -georefFileOutputPath /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing_25d/odm_georeferencing_model_geo.txt
[INFO]    Calculating cropping area and generating bounds shapefile from point cloud
[INFO]    running pdal translate -i "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.laz" -o "/www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.decimated.las" decimation --filters.decimation.step=40
[INFO]    running pdal info --boundary --filters.hexbin.edge_size=1 --filters.hexbin.threshold=0 /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.decimated.las > /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.boundary.json
[INFO]    running pdal info --summary /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.laz > /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.summary.json
[INFO]    running ogr2ogr -overwrite -f GPKG -a_srs "+proj=utm +zone=32 +datum=WGS84 +units=m +no_defs" /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.bounds.gpkg /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.bounds.geojson
[INFO]    Finished odm_georeferencing stage
[INFO]    Running odm_dem stage
[INFO]    Classify: False
[INFO]    Create DSM: False
[INFO]    Create DTM: False
[INFO]    DEM input file /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.laz found: True
[WARNING] DEM will not be generated
[INFO]    Finished odm_dem stage
[INFO]    Running odm_orthophoto stage
[WARNING] Maximum resolution set to GSD - 10.0% (6.58 cm / pixel, requested resolution was 5.0 cm / pixel)
[INFO]    running /code/build/bin/odm_orthophoto -inputFiles /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_texturing_25d/odm_textured_model_geo.obj -logFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto_log.txt -outputFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto_render.tif -resolution 15.1875531975  -outputCornerFile /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto_corners.txt
[INFO]    Creating GeoTIFF
[INFO]    running gdal_translate -a_ullr 676040.99669 6400578.79604 676943.265489 6399676.52724 -co NUM_THREADS=2 -co BIGTIFF=IF_SAFER -co BLOCKYSIZE=512 -co COMPRESS=DEFLATE -co BLOCKXSIZE=512 -co TILED=YES -co PREDICTOR=2 -a_srs "+proj=utm +zone=32 +datum=WGS84 +units=m +no_defs +type=crs" --config GDAL_CACHEMAX 47.4% --config GDAL_TIFF_INTERNAL_MASK YES /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto_render.tif /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto.tif > /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/gdal_translate_log.txt
[INFO]    Cropping /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto.tif
[INFO]    running gdalwarp -cutline /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_georeferencing/odm_georeferenced_model.bounds.gpkg -crop_to_cutline -co NUM_THREADS=2 -co BIGTIFF=IF_SAFER -co BLOCKYSIZE=512 -co COMPRESS=DEFLATE -co BLOCKXSIZE=512 -co TILED=YES -co PREDICTOR=2 -dstalpha /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto.original.tif /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto.tif --config GDAL_CACHEMAX 47.4%
Using band 4 of source image as alpha.
Creating output file that is 10521P x 11969L.
Processing input file /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0/odm_orthophoto/odm_orthophoto.original.tif.
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[INFO]    Finished odm_orthophoto stage
[INFO]    No more stages to run
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[INFO]    MMm-.hMNhNMMMMMMMMNo`/MMMMMNdhyyyyhhdNMMMM+`oNMMMMMMMMNhNMh.-mMM
[INFO]    MM:`mMMN/-sNNMMMMMMMo yMMMMMMMMMMMMMMMMMMy sMMMMMMMNNs-/NMMm`:MM
[INFO]    Mm /MMMMMd/.-oMMMMMMN :MMMMMMMMMMMMMMMMMM-`MMMMMMMo-./dMMMMM/ NM
[INFO]    Mm /MMMMMMm:-`sNMMMMN :MMMMMMMMMMMMMMMMMM-`MMMMMNs`-/NMMMMMM/ NM
[INFO]    MM:`mMMMMMMMMd/-sMMMo yMMMMMMMMMMMMMMMMMMy sMMMs-/dMMMMMMMMd`:MM
[INFO]    MMm-.hMMMMMMMMMdhMNo`+MMMMMMMMMMMMMMMMMMMM+`oNMhdMMMMMMMMMh.-mMM
[INFO]    MMMNo./hmNMMMMMNms--yMMMMMMMMMMMMMMMMMMMMMMy--smNMMMMMNmy/.oNMMM
[INFO]    MMMMMms:-:/+++/:-+hMMMMMMMMMMMMMMMMMMMMMMMMMNh+-:/+++/:-:smMMMMM
[INFO]    MMMMMMMMNdhhyhdmMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMmdhyhhmNMMMMMMMM
[INFO]    MMMMMMMMMMMMMMMNNNNNMMMMMMNNNNNNMMMMMMMMNNMMMMMMMNNMMMMMMMMMMMMM
[INFO]    MMMMMMMMMMMMMh/-...-+dMMMm......:+hMMMMs../MMMMMo..sMMMMMMMMMMMM
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[INFO]    OpenDroneMap app finished - Tue Feb 04 10:52:31  2020
Postprocessing: /www/data/63fb0676-2194-43a6-81e3-771aa41a14b0

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