import sys, os

import rasterio

import geopandas as gpd
africoverFile = r""
inFolder = ""

allFiles = []
for root, dirs, files in os.walk(inFolder):
    for f in files:
        if f[-3:] == "shp":
            allTifs.append(os.path.join(root, f))

for shp in allFiles:
    try:
        clipRaster(gpd.read_file(shp), rasterio.open(africoverFile), shp.replace(".shp", "_AFRICOVER.tif"))
        res = zonalStatistics(shp, africoverFile, rastType='C', unqVals=[0,1,2,3,4,5,6,7,8,9,10])
        final = gpd.DataFrame(res, columns = ["lc_%s" % x for x in [0,1,2,3,4,5,6,7,8,9,10]])
        final.to_csv(shp.replace(".shp", "_AFRICA_Zonal.csv"))
    except:
       print("something failed with %s" % shp)