SHARE
TWEET

Untitled

a guest Jun 19th, 2017 100 Never
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
  1. Jun-19 16:03:13.939 [Actor Thread 4] WARN  nextflow.processor.TaskContext - Cannot serialize context map. Cause: java.lang.IllegalArgumentException: type cannot be null. -- Resume will not work on this process
  2. Jun-19 16:03:13.942 [Actor Thread 4] DEBUG nextflow.processor.TaskContext - Failed to serialize delegate map items: [
  3.   'x':[null] = [firstName:Jane, lastName:Doe]
  4.   '$':[java.lang.Boolean] = true
  5.   'task':[nextflow.processor.TaskConfig] = [process:foo, index:2, echo:false, validExitStatus:[0], maxRetries:1, maxErrors:3, shell:[/bin/bash, -ue], executor:local, name:foo (2), cacheable:true, errorStrategy:TERMINATE, workDir:/Volumes/LG_01_WD3TB/tmp/preqctest/work/85/8e1bdbe341d5644034fd3e24426884, hash:858e1bdbe341d5644034fd3e24426884]
  6.   'paramsFilePath':[java.io.File] = /Volumes/LG_01_WD3TB/tmp/preqctest/work/85/8e1bdbe341d5644034fd3e24426884/params.yaml
  7.   'yaml':[org.yaml.snakeyaml.Yaml] = Yaml:94182769
  8. ]
  9. com.esotericsoftware.kryo.KryoException: java.lang.IllegalArgumentException: type cannot be null.
  10. Serialization trace:
  11. multiRepresenters (org.yaml.snakeyaml.representer.Representer)
  12. representer (org.yaml.snakeyaml.Yaml)
  13.         at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:82)
  14.         at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:495)
  15.         at com.esotericsoftware.kryo.Kryo.writeObject(Kryo.java:523)
  16.         at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:61)
  17.         at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:495)
  18.         at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:599)
  19.         at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:95)
  20.         at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:21)
  21.         at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:599)
  22.         at com.esotericsoftware.kryo.Kryo$writeClassAndObject$1.call(Unknown Source)
  23.         at nextflow.util.KryoHelper.serialize(SerializationHelper.groovy:166)
  24.         at nextflow.util.KryoHelper$serialize.call(Unknown Source)
  25.         at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:48)
  26.         at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:113)
  27.         at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:125)
  28.         at nextflow.processor.TaskContext.serialize(TaskContext.groovy:181)
RAW Paste Data
Top