Intelligence/Learning perks as of 1/4/17, incomplete

A Certain Scientific Railgun (Hard Science)
Adventure Time (Suckin' At Something…)
Alpha Centauri (Technician) (Empath) (Power) (Wealth) (Knowledge)
Anima Beyond Fantasy (Freelancer's Talents) (Martial Talent)
Animorphs (Follow the Trail)
Aquaria (Lumarian race option)
Archer (Linguist)
ARIA (Language Barriers?)
Arrowverse (Genius) (Kinesthetic Learning)
Assassins Creed (The Human Condition)
Atelier Arland (Assistance)
Avatar the Last Airbender (Innovative)
Avernum (Natural Mage)
Banner Saga (Blessing of Dundr)
Basilisk (Monster)
Battletech (Cunning Linguist)
Bayonetta (Scholar Origin) (Prior Findings)
Ben10 (Galvan and Cerebrocrustacean race option)
Berserk (Gift of Words)
Big O (Logic)
Binbougami (Thrill of the Fight) (Gettin' To You)
Biomega (Internal Ballistics Calculations) (Chromosome Analysis Specialist) (Shinensoku)
Bionicle (Wisdom)
Bioshock (Savant Genius)
Bleach (Gifted)
Buffyverse (Brilliant) (Robotics Genius)
DC (Genius)
Demons Souls (Heightened Capacity)
Divinity Dragon Commander (Tactical Genius)
Dragon Age - Inquisition (Beautiful Mind) (Heavy Hitter) (Masterful Magi) (Specialized Skillset)
Dragonlance (Race Options: Gnome, Irda, Aurak, Bozak, Vapor)
Eclipse Phase (Aptitude Enhancement Mods - Cognition)
Fallout (Educated) (Physical Enhancement Implant - Intelligence)
Fire Emblem Awakening (Aptitude)
Futurama (Mathematics) (Inventor)
Gunnerkrigg Court (Omnilearner)
Gurren Lagann (Spiral Energy)
Halo (Erudition)
Harry Potter (Wit Beyond Measure)
Homeworld (Tactical 'Genius')
Jackie-Chan Adventure (Tech-Savvy) (Intelligence)
Kid Radd (Limit Mode)
Kim Possible (Genius)
Kingdom Hearts (Your Summer Vacation is Finally Over)
KOTOR (Intelligence Specialization)
Legend of the Galactic Heroes (Even a Tenth of My Intelligence)
LOTR (Riddle-Master)
Lovecraft (Super Sleuthing)
Magicka (Comptetence)
Marvel (Brains)
Marvel Cinematic Universe (Tech Expert Origin)
Mega Man Battle Network (Battle Intuition)
Mega Man Zero (Born Scientist)
Metal Gear Solid (I've Got Science) (No Nation We Inhabit)
Morroblivian (Sleep On It)
Mount & Blade (Intelligence)
Muppet Treasure Island (Smart as Paint)
NuTrek (Brilliant Deductions) (Superhuman)
Panty & Stocking With Garterbelt (World's Smartest Monkey)
Parasyte (Brightest)
Penny Dreadful (Quick Study)
Pokemon (Savant)
Quest for Glory (Magic Training) (Clever)
R-Type (Raw Danger) (Bydo Lab Chief)
Rick and Morty (Genius)
Skyrim (The Warrior, Mage, Thief, and Lady Standing Stones (Free!))(Clever Craft)
Spyro the Dragon (Quick Learner)
Star Trek (Scientific Mind) (Treknobabbler) (To Boldly Come…)
Star Trek TNG+DS9 (Augmented)
Supreme Commander (Symbiont) (Brackman Intellect)
Team Fortress 2 (Saxxy Australian)
Teen Titans (Genius)
The Sims 3 (Eccentric) (Genius) (Disciplined) (Virtuoso)
They Live (Mastermind)
Tropico – The Dictator (Special Ops Training) (Literacy Program)
True Lies (Polyglotism) (Care to Tango)
Twilight (Fast Learner)
Vampire the Masquerade – Bloodlines (Lockpicking) (Hacking) (Scholarship)
Van Helsing (Crazed Physician)
Venture Bros. (Superscience)