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- for d in /path/to/folder/S{001..012}; do num=${d##*S} &&
- docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
- /path/to/out:/out -v
- /license.txt:/opt/freesurfer/license.txt --
- entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
- /bids/S"${num}"/anat/S"${num}"_T1w.nii.gz -subjid P"${num}" -sd
- /out -all; done
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