g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT analysis.o -MD -MP -MF .deps/analysis.Tpo -c -o analysis.o analysis.cc
mv -f .deps/analysis.Tpo .deps/analysis.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT atom_parameter_manager.o -MD -MP -MF .deps/atom_parameter_manager.Tpo -c -o atom_parameter_manager.o atom_parameter_manager.cc
mv -f .deps/atom_parameter_manager.Tpo .deps/atom_parameter_manager.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT banner.o -MD -MP -MF .deps/banner.Tpo -c -o banner.o banner.cc
mv -f .deps/banner.Tpo .deps/banner.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT bestpdb.o -MD -MP -MF .deps/bestpdb.Tpo -c -o bestpdb.o bestpdb.cc
mv -f .deps/bestpdb.Tpo .deps/bestpdb.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT calculateEnergies.o -MD -MP -MF .deps/calculateEnergies.Tpo -c -o calculateEnergies.o calculateEnergies.cc
mv -f .deps/calculateEnergies.Tpo .deps/calculateEnergies.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT call_glss.o -MD -MP -MF .deps/call_glss.Tpo -c -o call_glss.o call_glss.cc
mv -f .deps/call_glss.Tpo .deps/call_glss.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT call_gs.o -MD -MP -MF .deps/call_gs.Tpo -c -o call_gs.o call_gs.cc
mv -f .deps/call_gs.Tpo .deps/call_gs.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT call_ls.o -MD -MP -MF .deps/call_ls.Tpo -c -o call_ls.o call_ls.cc
mv -f .deps/call_ls.Tpo .deps/call_ls.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT changeState.o -MD -MP -MF .deps/changeState.Tpo -c -o changeState.o changeState.cc
mv -f .deps/changeState.Tpo .deps/changeState.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT check_header_float.o -MD -MP -MF .deps/check_header_float.Tpo -c -o check_header_float.o check_header_float.cc
mv -f .deps/check_header_float.Tpo .deps/check_header_float.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT check_header_int.o -MD -MP -MF .deps/check_header_int.Tpo -c -o check_header_int.o check_header_int.cc
mv -f .deps/check_header_int.Tpo .deps/check_header_int.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT check_header_line.o -MD -MP -MF .deps/check_header_line.Tpo -c -o check_header_line.o check_header_line.cc
mv -f .deps/check_header_line.Tpo .deps/check_header_line.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT cluster_analysis.o -MD -MP -MF .deps/cluster_analysis.Tpo -c -o cluster_analysis.o cluster_analysis.cc
mv -f .deps/cluster_analysis.Tpo .deps/cluster_analysis.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT clmode.o -MD -MP -MF .deps/clmode.Tpo -c -o clmode.o clmode.cc
mv -f .deps/clmode.Tpo .deps/clmode.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT cmdmode.o -MD -MP -MF .deps/cmdmode.Tpo -c -o cmdmode.o cmdmode.cc
mv -f .deps/cmdmode.Tpo .deps/cmdmode.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT cnv_state_to_coords.o -MD -MP -MF .deps/cnv_state_to_coords.Tpo -c -o cnv_state_to_coords.o cnv_state_to_coords.cc
mv -f .deps/cnv_state_to_coords.Tpo .deps/cnv_state_to_coords.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT com.o -MD -MP -MF .deps/com.Tpo -c -o com.o com.cc
mv -f .deps/com.Tpo .deps/com.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT conformation_sampler.o -MD -MP -MF .deps/conformation_sampler.Tpo -c -o conformation_sampler.o conformation_sampler.cc
mv -f .deps/conformation_sampler.Tpo .deps/conformation_sampler.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT distdepdiel.o -MD -MP -MF .deps/distdepdiel.Tpo -c -o distdepdiel.o distdepdiel.cc
mv -f .deps/distdepdiel.Tpo .deps/distdepdiel.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT stateLibrary.o -MD -MP -MF .deps/stateLibrary.Tpo -c -o stateLibrary.o stateLibrary.cc
mv -f .deps/stateLibrary.Tpo .deps/stateLibrary.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT readfield.o -MD -MP -MF .deps/readfield.Tpo -c -o readfield.o readfield.cc
mv -f .deps/readfield.Tpo .deps/readfield.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT readmap.o -MD -MP -MF .deps/readmap.Tpo -c -o readmap.o readmap.cc
mv -f .deps/readmap.Tpo .deps/readmap.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT readPDBQT.o -MD -MP -MF .deps/readPDBQT.Tpo -c -o readPDBQT.o readPDBQT.cc
mv -f .deps/readPDBQT.Tpo .deps/readPDBQT.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT read_parameter_library.o -MD -MP -MF .deps/read_parameter_library.Tpo -c -o read_parameter_library.o read_parameter_library.cc
mv -f .deps/read_parameter_library.Tpo .deps/read_parameter_library.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.cc
mv -f .deps/eval.Tpo .deps/eval.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT gencau.o -MD -MP -MF .deps/gencau.Tpo -c -o gencau.o gencau.cc
mv -f .deps/gencau.Tpo .deps/gencau.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT getrms.o -MD -MP -MF .deps/getrms.Tpo -c -o getrms.o getrms.cc
mv -f .deps/getrms.Tpo .deps/getrms.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT get_atom_type.o -MD -MP -MF .deps/get_atom_type.Tpo -c -o get_atom_type.o get_atom_type.cc
mv -f .deps/get_atom_type.Tpo .deps/get_atom_type.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT getInitialState.o -MD -MP -MF .deps/getInitialState.Tpo -c -o getInitialState.o getInitialState.cc
mv -f .deps/getInitialState.Tpo .deps/getInitialState.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT getpdbcrds.o -MD -MP -MF .deps/getpdbcrds.Tpo -c -o getpdbcrds.o getpdbcrds.cc
mv -f .deps/getpdbcrds.Tpo .deps/getpdbcrds.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -DCHECK_ISNAN -c ./gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT initautodock.o -MD -MP -MF .deps/initautodock.Tpo -c -o initautodock.o initautodock.cc
mv -f .deps/initautodock.Tpo .deps/initautodock.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT input_state.o -MD -MP -MF .deps/input_state.Tpo -c -o input_state.o input_state.cc
mv -f .deps/input_state.Tpo .deps/input_state.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT investigate.o -MD -MP -MF .deps/investigate.Tpo -c -o investigate.o investigate.cc
mv -f .deps/investigate.Tpo .deps/investigate.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT linpack.o -MD -MP -MF .deps/linpack.Tpo -c -o linpack.o linpack.cc
mv -f .deps/linpack.Tpo .deps/linpack.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT ls.o -MD -MP -MF .deps/ls.Tpo -c -o ls.o ls.cc
mv -f .deps/ls.Tpo .deps/ls.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT mapping.o -MD -MP -MF .deps/mapping.Tpo -c -o mapping.o mapping.cc
mv -f .deps/mapping.Tpo .deps/mapping.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT minmeanmax.o -MD -MP -MF .deps/minmeanmax.Tpo -c -o minmeanmax.o minmeanmax.cc
mv -f .deps/minmeanmax.Tpo .deps/minmeanmax.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT mkNewState.o -MD -MP -MF .deps/mkNewState.Tpo -c -o mkNewState.o mkNewState.cc
mv -f .deps/mkNewState.Tpo .deps/mkNewState.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT mkTorTree.o -MD -MP -MF .deps/mkTorTree.Tpo -c -o mkTorTree.o mkTorTree.cc
mv -f .deps/mkTorTree.Tpo .deps/mkTorTree.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT mkRandomState.o -MD -MP -MF .deps/mkRandomState.Tpo -c -o mkRandomState.o mkRandomState.cc
mv -f .deps/mkRandomState.Tpo .deps/mkRandomState.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT nonbonds.o -MD -MP -MF .deps/nonbonds.Tpo -c -o nonbonds.o nonbonds.cc
mv -f .deps/nonbonds.Tpo .deps/nonbonds.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT openfile.o -MD -MP -MF .deps/openfile.Tpo -c -o openfile.o openfile.cc
mv -f .deps/openfile.Tpo .deps/openfile.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT output_state.o -MD -MP -MF .deps/output_state.Tpo -c -o output_state.o output_state.cc
mv -f .deps/output_state.Tpo .deps/output_state.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT parse_com_line.o -MD -MP -MF .deps/parse_com_line.Tpo -c -o parse_com_line.o parse_com_line.cc
mv -f .deps/parse_com_line.Tpo .deps/parse_com_line.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT parse_dpf_line.o -MD -MP -MF .deps/parse_dpf_line.Tpo -c -o parse_dpf_line.o parse_dpf_line.cc
mv -f .deps/parse_dpf_line.Tpo .deps/parse_dpf_line.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT parse_param_line.o -MD -MP -MF .deps/parse_param_line.Tpo -c -o parse_param_line.o parse_param_line.cc
mv -f .deps/parse_param_line.Tpo .deps/parse_param_line.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT parse_PDBQT_line.o -MD -MP -MF .deps/parse_PDBQT_line.Tpo -c -o parse_PDBQT_line.o parse_PDBQT_line.cc
mv -f .deps/parse_PDBQT_line.Tpo .deps/parse_PDBQT_line.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT parse_trj_line.o -MD -MP -MF .deps/parse_trj_line.Tpo -c -o parse_trj_line.o parse_trj_line.cc
mv -f .deps/parse_trj_line.Tpo .deps/parse_trj_line.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT parsetypes.o -MD -MP -MF .deps/parsetypes.Tpo -c -o parsetypes.o parsetypes.cc
mv -f .deps/parsetypes.Tpo .deps/parsetypes.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT print_2x.o -MD -MP -MF .deps/print_2x.Tpo -c -o print_2x.o print_2x.cc
mv -f .deps/print_2x.Tpo .deps/print_2x.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT print_atomic_energies.o -MD -MP -MF .deps/print_atomic_energies.Tpo -c -o print_atomic_energies.o print_atomic_energies.cc
mv -f .deps/print_atomic_energies.Tpo .deps/print_atomic_energies.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT print_avsfld.o -MD -MP -MF .deps/print_avsfld.Tpo -c -o print_avsfld.o print_avsfld.cc
mv -f .deps/print_avsfld.Tpo .deps/print_avsfld.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT writePDBQT.o -MD -MP -MF .deps/writePDBQT.Tpo -c -o writePDBQT.o writePDBQT.cc
mv -f .deps/writePDBQT.Tpo .deps/writePDBQT.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT print_rem.o -MD -MP -MF .deps/print_rem.Tpo -c -o print_rem.o print_rem.cc
mv -f .deps/print_rem.Tpo .deps/print_rem.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT printdate.o -MD -MP -MF .deps/printdate.Tpo -c -o printdate.o printdate.cc
mv -f .deps/printdate.Tpo .deps/printdate.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT printEnergies.o -MD -MP -MF .deps/printEnergies.Tpo -c -o printEnergies.o printEnergies.cc
mv -f .deps/printEnergies.Tpo .deps/printEnergies.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT printhms.o -MD -MP -MF .deps/printhms.Tpo -c -o printhms.o printhms.cc
mv -f .deps/printhms.Tpo .deps/printhms.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT prClusterHist.o -MD -MP -MF .deps/prClusterHist.Tpo -c -o prClusterHist.o prClusterHist.cc
mv -f .deps/prClusterHist.Tpo .deps/prClusterHist.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT prInitialState.o -MD -MP -MF .deps/prInitialState.Tpo -c -o prInitialState.o prInitialState.cc
mv -f .deps/prInitialState.Tpo .deps/prInitialState.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT prTorConList.o -MD -MP -MF .deps/prTorConList.Tpo -c -o prTorConList.o prTorConList.cc
mv -f .deps/prTorConList.Tpo .deps/prTorConList.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT qmultiply.o -MD -MP -MF .deps/qmultiply.Tpo -c -o qmultiply.o qmultiply.cc
mv -f .deps/qmultiply.Tpo .deps/qmultiply.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT qtransform.o -MD -MP -MF .deps/qtransform.Tpo -c -o qtransform.o qtransform.cc
mv -f .deps/qtransform.Tpo .deps/qtransform.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT quicksort.o -MD -MP -MF .deps/quicksort.Tpo -c -o quicksort.o quicksort.cc
mv -f .deps/quicksort.Tpo .deps/quicksort.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT ranlib.o -MD -MP -MF .deps/ranlib.Tpo -c -o ranlib.o ranlib.cc
mv -f .deps/ranlib.Tpo .deps/ranlib.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT rep.o -MD -MP -MF .deps/rep.Tpo -c -o rep.o rep.cc
mv -f .deps/rep.Tpo .deps/rep.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT scauchy.o -MD -MP -MF .deps/scauchy.Tpo -c -o scauchy.o scauchy.cc
mv -f .deps/scauchy.Tpo .deps/scauchy.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT set_cmd_io_std.o -MD -MP -MF .deps/set_cmd_io_std.Tpo -c -o set_cmd_io_std.o set_cmd_io_std.cc
mv -f .deps/set_cmd_io_std.Tpo .deps/set_cmd_io_std.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT setflags.o -MD -MP -MF .deps/setflags.Tpo -c -o setflags.o setflags.cc
mv -f .deps/setflags.Tpo .deps/setflags.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT simanneal.o -MD -MP -MF .deps/simanneal.Tpo -c -o simanneal.o simanneal.cc
mv -f .deps/simanneal.Tpo .deps/simanneal.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT sort_enrg.o -MD -MP -MF .deps/sort_enrg.Tpo -c -o sort_enrg.o sort_enrg.cc
mv -f .deps/sort_enrg.Tpo .deps/sort_enrg.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT stop.o -MD -MP -MF .deps/stop.Tpo -c -o stop.o stop.cc
mv -f .deps/stop.Tpo .deps/stop.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT strindex.o -MD -MP -MF .deps/strindex.Tpo -c -o strindex.o strindex.cc
mv -f .deps/strindex.Tpo .deps/strindex.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT success.o -MD -MP -MF .deps/success.Tpo -c -o success.o success.cc
mv -f .deps/success.Tpo .deps/success.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT summarizegrids.o -MD -MP -MF .deps/summarizegrids.Tpo -c -o summarizegrids.o summarizegrids.cc
mv -f .deps/summarizegrids.Tpo .deps/summarizegrids.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.cc
mv -f .deps/support.Tpo .deps/support.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT swap.o -MD -MP -MF .deps/swap.Tpo -c -o swap.o swap.cc
mv -f .deps/swap.Tpo .deps/swap.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT timesys.o -MD -MP -MF .deps/timesys.Tpo -c -o timesys.o timesys.cc
mv -f .deps/timesys.Tpo .deps/timesys.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT timesyshms.o -MD -MP -MF .deps/timesyshms.Tpo -c -o timesyshms.o timesyshms.cc
mv -f .deps/timesyshms.Tpo .deps/timesyshms.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT torNorVec.o -MD -MP -MF .deps/torNorVec.Tpo -c -o torNorVec.o torNorVec.cc
mv -f .deps/torNorVec.Tpo .deps/torNorVec.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT torsion.o -MD -MP -MF .deps/torsion.Tpo -c -o torsion.o torsion.cc
mv -f .deps/torsion.Tpo .deps/torsion.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT trilinterp.o -MD -MP -MF .deps/trilinterp.Tpo -c -o trilinterp.o trilinterp.cc
mv -f .deps/trilinterp.Tpo .deps/trilinterp.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT usage.o -MD -MP -MF .deps/usage.Tpo -c -o usage.o usage.cc
mv -f .deps/usage.Tpo .deps/usage.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT weedbonds.o -MD -MP -MF .deps/weedbonds.Tpo -c -o weedbonds.o weedbonds.cc
mv -f .deps/weedbonds.Tpo .deps/weedbonds.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT warn_bad_file.o -MD -MP -MF .deps/warn_bad_file.Tpo -c -o warn_bad_file.o warn_bad_file.cc
mv -f .deps/warn_bad_file.Tpo .deps/warn_bad_file.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT coliny.o -MD -MP -MF .deps/coliny.Tpo -c -o coliny.o coliny.cc
mv -f .deps/coliny.Tpo .deps/coliny.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT eintcal.o -MD -MP -MF .deps/eintcal.Tpo -c -o eintcal.o eintcal.cc
mv -f .deps/eintcal.Tpo .deps/eintcal.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT eintcalPrint.o -MD -MP -MF .deps/eintcalPrint.Tpo -c -o eintcalPrint.o eintcalPrint.cc
mv -f .deps/eintcalPrint.Tpo .deps/eintcalPrint.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT intnbtable.o -MD -MP -MF .deps/intnbtable.Tpo -c -o intnbtable.o intnbtable.cc
mv -f .deps/intnbtable.Tpo .deps/intnbtable.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT nbe.o -MD -MP -MF .deps/nbe.Tpo -c -o nbe.o nbe.cc
mv -f .deps/nbe.Tpo .deps/nbe.Po
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT eMapPrepCuda.o -MD -MP -MF .deps/eMapPrepCuda.Tpo -c -o eMapPrepCuda.o eMapPrepCuda.cc
mv -f .deps/eMapPrepCuda.Tpo .deps/eMapPrepCuda.Po
rm -f libad.a
ar cru libad.a analysis.o atom_parameter_manager.o banner.o bestpdb.o calculateEnergies.o call_glss.o call_gs.o call_ls.o changeState.o check_header_float.o check_header_int.o check_header_line.o cluster_analysis.o clmode.o cmdmode.o cnv_state_to_coords.o com.o conformation_sampler.o distdepdiel.o stateLibrary.o readfield.o readmap.o readPDBQT.o read_parameter_library.o eval.o gencau.o getrms.o get_atom_type.o getInitialState.o getpdbcrds.o gs.o initautodock.o input_state.o investigate.o linpack.o ls.o mapping.o minmeanmax.o mkNewState.o mkTorTree.o mkRandomState.o nonbonds.o openfile.o output_state.o parse_com_line.o parse_dpf_line.o parse_param_line.o parse_PDBQT_line.o parse_trj_line.o parsetypes.o print_2x.o print_atomic_energies.o print_avsfld.o writePDBQT.o print_rem.o printdate.o printEnergies.o printhms.o prClusterHist.o prInitialState.o prTorConList.o qmultiply.o qtransform.o quicksort.o ranlib.o rep.o scauchy.o set_cmd_io_std.o setflags.o simanneal.o sort_enrg.o stop.o strindex.o success.o summarizegrids.o support.o swap.o timesys.o timesyshms.o torNorVec.o torsion.o trilinterp.o usage.o weedbonds.o warn_bad_file.o coliny.o eintcal.o eintcalPrint.o intnbtable.o nbe.o eMapPrepCuda.o 
ranlib libad.a
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart  -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc
mv -f .deps/main.Tpo .deps/main.Po
nvcc -c *.cu -D_DEBUG -g -use_fast_math -I. -I/common/inc -DCUDA_READY -DNOSQRT -DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT -DWRITEPDBQSTATE -I./../acro/include 
g++  -I/usr/local/cuda/include -I/common/inc  -L/usr/local/cuda/bin -L/usr/local/cuda/lib -L/lib -L/common/lib/linux -lcuda -lcudart    -o autodock4 main.o libad.a -lm select_alloc_wrapper.o eval_wrapper.o