Volume 1 - Chapters 2 and 3
Volume 8 - "First Day"
Volume 1 - Beginning of Chapter 4
Gaiden - "Aria in the Starless Night"
ME7 - "Continuation: Aria in the Starless Night"
ME8 - "Rondo of the Transient Sword"
ME9 - "Monochrome Concerto"
Volume 2 - "Red-nosed Reindeer"
Volume 2 - "Black Swordsman"
ME1 - "The Progressers"
Volume 8 - "A Murder Case in the Area"
Volume 2 - "Warmth of the Heart" Part 1-3
Gaiden - "Sound of Water, Sound of Hammer"
ME4 - "Cold Hand, Warm Heart"
Volume 3 - Beginning of Prologue
Volumes 1, 2 - Prologue
Volume 1 - Chapter 1
Volume 1 - End of Chapter 4
Volume 1 - Chapters 5-16.5
Volume 2 - "Morning Dew Girl"
ME6 - "Algade Showdown"
Volume 1 - Chapters 17-23
Volume 2 - "Warmth of the Heart" Part 4
Volume 1 - Chapters 24-25
Volume 3 - End of Prologue
ME5 - "Salvia"
Volumes 3-4
Volumes 5-6
Volume 8 - "Caliber"
Gaiden - "Caliber SS" (Alternate end, takes part after Part 3 and follows a "What if Klein didn't save Freyja" scenario.)
Volume 7
ME3 - "Ceramic Heart"
Accel World Volume 10 - "Versus"
Volume 9 - Alicization Beginning