{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import os\n",
    "from glob import glob\n",
    "from tqdm import tqdm_notebook as tqdm\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "from collections import defaultdict"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "SALAMI_PATH = os.path.join(os.environ['HOME'], 'data', 'salami-data-public')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "uppers = sorted(glob(os.path.join(SALAMI_PATH, 'annotations', '*', 'parsed', '*_uppercase.txt')))\n",
    "lowers = sorted(glob(os.path.join(SALAMI_PATH, 'annotations', '*', 'parsed', '*_lowercase.txt')))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "def read_file(fname):\n",
    "    return pd.read_table(fname, header=None, names=['time', 'label'])\n",
    "\n",
    "def track_id(fname):\n",
    "    return os.path.basename(os.path.dirname(os.path.dirname(fname)))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "assert len(uppers) == len(lowers)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Bad alignment: 100  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[72.77673469300001 'G']]\n",
      "\n",
      "Bad alignment: 1000 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[359.32589569099997 'Z']]\n",
      "\n",
      "Bad alignment: 1000 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[358.771519274 'Z']]\n",
      "\n",
      "Bad alignment: 1002 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[375.42950113300003 'Z']]\n",
      "\n",
      "Bad alignment: 1002 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.073469387 'Z']\n",
      " [375.489886621 'Z']]\n",
      "\n",
      "Bad alignment: 1003 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[277.912562358 'Z']]\n",
      "\n",
      "Bad alignment: 1003 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[278.01047619 'Z']]\n",
      "\n",
      "Bad alignment: 1006 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[255.069387755 'Z']]\n",
      "\n",
      "Bad alignment: 1006 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[255.091428571 'Z']]\n",
      "\n",
      "Bad alignment: 1007 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[161.77204081600001 'Z']]\n",
      "\n",
      "Bad alignment: 1007 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.029024942999999997 'Z']\n",
      " [163.770725623 'Z']]\n",
      "\n",
      "Bad alignment: 1010 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[2.8730839 'Z']\n",
      " [168.94446712 'Z']]\n",
      "\n",
      "Bad alignment: 1010 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[3.2979818589999996 'Z']\n",
      " [171.18975056600001 'Z']]\n",
      "\n",
      "Bad alignment: 1016 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[325.173375 'Z']]\n",
      "\n",
      "Bad alignment: 1016 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[60.4364375 'C']\n",
      " [104.557041666 'C']\n",
      " [129.871916666 'C']\n",
      " [173.946875 'C']\n",
      " [218.02864583299998 'E']\n",
      " [297.673104166 \"C'\"]\n",
      " [326.444708333 'Z']]\n",
      "\n",
      "Bad alignment: 1020 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[192.748843537 'Z']]\n",
      "\n",
      "Bad alignment: 1021 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[649.855691609 'Z']]\n",
      "\n",
      "Bad alignment: 1021 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.05 'Z']\n",
      " [651.043990929 'Z']]\n",
      "\n",
      "Bad alignment: 1022 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[214.52943310599997 'Z']]\n",
      "\n",
      "Bad alignment: 1022 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[213.182403628 'Z']]\n",
      "\n",
      "Bad alignment: 1023 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[166.638458333 'Z']]\n",
      "\n",
      "Bad alignment: 1023 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[166.16533333299998 'Z']]\n",
      "\n",
      "Bad alignment: 1026 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[335.113764172 'Z']]\n",
      "\n",
      "Bad alignment: 1026 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.044897959 'Z']\n",
      " [335.375510204 'Z']]\n",
      "\n",
      "Bad alignment: 1028 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[469.545827664 'Z']]\n",
      "\n",
      "Bad alignment: 1028 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[470.29696145099996 'Z']]\n",
      "\n",
      "Bad alignment: 1032 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[3.041814058 'Z']]\n",
      "\n",
      "Bad alignment: 1034 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.068208616 'Z']\n",
      " [429.76809523800006 'Z']]\n",
      "\n",
      "Bad alignment: 1034 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[375.729479166 'E']\n",
      " [394.9444375 'Z']]\n",
      "\n",
      "Bad alignment: 1035 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[217.315555555 'Z']]\n",
      "\n",
      "Bad alignment: 1035 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[217.36362811700002 'Z']]\n",
      "\n",
      "Bad alignment: 1036 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.044897959 'Z']\n",
      " [151.81206349200002 'Z']]\n",
      "\n",
      "Bad alignment: 1036 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.052244897 'Z']\n",
      " [149.259070294 'Z']]\n",
      "\n",
      "Bad alignment: 1037 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[540.119365079 'Z']]\n",
      "\n",
      "Bad alignment: 1038 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[330.448526077 'Z']]\n",
      "\n",
      "Bad alignment: 1038 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.522448979 'Z']\n",
      " [331.546145124 'Z']]\n",
      "\n",
      "Bad alignment: 1043 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.032653061000000004 'Z']\n",
      " [324.915124716 'Z']]\n",
      "\n",
      "Bad alignment: 1044 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[394.179229024 'Z']]\n",
      "\n",
      "Bad alignment: 1044 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[395.44918367300005 'Z']]\n",
      "\n",
      "Bad alignment: 1045 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[285.721428571 'Z']]\n",
      "\n",
      "Bad alignment: 1050 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[273.12877551 'Z']]\n",
      "\n",
      "Bad alignment: 1051 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[475.40095238 'Z']]\n",
      "\n",
      "Bad alignment: 1051 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[474.861519274 'Z']]\n",
      "\n",
      "Bad alignment: 1054 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[159.304671201 'Z']]\n",
      "\n",
      "Bad alignment: 1054 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.040816326 'Z']\n",
      " [161.542857142 'Z']]\n",
      "\n",
      "Bad alignment: 1055 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[235.49723356 'Z']]\n",
      "\n",
      "Bad alignment: 1055 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[149.022585034 'E']\n",
      " [161.737437641 'F']\n",
      " [181.556825396 'E']\n",
      " [189.483197278 'F']\n",
      " [201.76199546400002 \"E'\"]\n",
      " [212.457142857 'F']\n",
      " [234.71814058900003 'Z']]\n",
      "\n",
      "Bad alignment: 1058 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[8.364421768 'A']\n",
      " [46.420975056 'C']\n",
      " [63.39047619 'C']\n",
      " [81.455170068 'C']\n",
      " [99.36707482899999 'E']\n",
      " [147.414285714 'C']\n",
      " [251.824852607 'C']\n",
      " [269.819070294 'C']\n",
      " [287.763197278 'E']\n",
      " [335.933696145 \"C'\"]\n",
      " [348.73786848 'Z']]\n",
      "\n",
      "Bad alignment: 1058 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [348.653424036 'Z']]\n",
      "\n",
      "Bad alignment: 1059 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[323.60705215400003 'Z']]\n",
      "\n",
      "Bad alignment: 1059 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.439637188 'A']\n",
      " [83.900861678 'C']\n",
      " [323.729886621 'Z']]\n",
      "\n",
      "Bad alignment: 1062 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[561.017324263 'Z']]\n",
      "\n",
      "Bad alignment: 1063 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [262.037188208 'Z']]\n",
      "\n",
      "Bad alignment: 1063 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.65015873 'Z']\n",
      " [260.731927437 'Z']]\n",
      "\n",
      "Bad alignment: 1066 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[208.793832199 'E']\n",
      " [504.09795918300006 'Z']]\n",
      "\n",
      "Bad alignment: 1066 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[504.179183673 'Z']]\n",
      "\n",
      "Bad alignment: 1071 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[289.400226757 'Z']]\n",
      "\n",
      "Bad alignment: 1077 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.03047619 'Z']\n",
      " [291.622358276 'Z']]\n",
      "\n",
      "Bad alignment: 1077 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [290.683764172 'Z']]\n",
      "\n",
      "Bad alignment: 1078 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[161.879682539 'Z']]\n",
      "\n",
      "Bad alignment: 1078 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[161.614081632 'Z']]\n",
      "\n",
      "Bad alignment: 1082 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[438.940181405 'Z']]\n",
      "\n",
      "Bad alignment: 1082 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[437.928344671 'Z']]\n",
      "\n",
      "Bad alignment: 1083 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[309.36893424 'Z']]\n",
      "\n",
      "Bad alignment: 1086 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[116.51340136 'D']]\n",
      "\n",
      "Bad alignment: 1090 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.048 'A']\n",
      " [328.524458333 'Z']]\n",
      "\n",
      "Bad alignment: 1090 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[327.582333333 'Z']]\n",
      "\n",
      "Bad alignment: 1091 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[191.243469387 'Z']]\n",
      "\n",
      "Bad alignment: 1091 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[193.273469387 'Z']\n",
      " [211.60258503400001 'Z']\n",
      " [344.62040816300004 'Z']]\n",
      "\n",
      "Bad alignment: 1092 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[205.2760625 'Z']]\n",
      "\n",
      "Bad alignment: 1092 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[207.03328125 'Z']]\n",
      "\n",
      "Bad alignment: 1093 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[290.22621315099997 'Z']]\n",
      "\n",
      "Bad alignment: 1094 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.456258503 'Z']\n",
      " [2.4260997730000002 'A']\n",
      " [217.706575963 'Z']]\n",
      "\n",
      "Bad alignment: 1100 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[171.59546485200002 'D']\n",
      " [320.510045351 'Z']]\n",
      "\n",
      "Bad alignment: 1106 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[171.816145124 'Z']]\n",
      "\n",
      "Bad alignment: 1106 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[172.524263038 'Z']]\n",
      "\n",
      "Bad alignment: 1110 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.050068027 'Z']\n",
      " [232.37 'Z']]\n",
      "\n",
      "Bad alignment: 1110 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.034829931 'Z']\n",
      " [238.78675736900001 'Z']]\n",
      "\n",
      "Bad alignment: 1118 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[29.890702946999998 'B']]\n",
      "\n",
      "Bad alignment: 1119 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[24.915011337 'Z']\n",
      " [261.772857142 'Z']]\n",
      "\n",
      "Bad alignment: 1119 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[261.028571428 'Z']]\n",
      "\n",
      "Bad alignment: 1120 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.040816326 'Z']\n",
      " [233.290839002 'Z']]\n",
      "\n",
      "Bad alignment: 1120 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.043537414 'Z']\n",
      " [58.511904761000004 'Z']\n",
      " [232.305600907 'Z']]\n",
      "\n",
      "Bad alignment: 1122 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[2.367278911 'A']\n",
      " [210.877777777 'C']\n",
      " [219.70020408099998 'Z']]\n",
      "\n",
      "Bad alignment: 1122 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[219.542857142 'Z']]\n",
      "\n",
      "Bad alignment: 1127 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[610.0468707480001 'Z']]\n",
      "\n",
      "Bad alignment: 1127 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.048979590999999996 'Z']\n",
      " [609.900657596 'Z']]\n",
      "\n",
      "Bad alignment: 1128 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[440.86607709699996 'Z']]\n",
      "\n",
      "Bad alignment: 1128 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[254.776439909 'D']\n",
      " [439.81623582699996 'Z']]\n",
      "\n",
      "Bad alignment: 1133 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [680.900453514 'Z']]\n",
      "\n",
      "Bad alignment: 1133 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.040816326 'Z']\n",
      " [680.8 'Z']]\n",
      "\n",
      "Bad alignment: 1134 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[253.397142857 'Z']]\n",
      "\n",
      "Bad alignment: 1138 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.082666666 'Z']]\n",
      "\n",
      "Bad alignment: 1142 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[242.41632653 'E']]\n",
      "\n",
      "Bad alignment: 1143 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[363.093356009 'Z']]\n",
      "\n",
      "Bad alignment: 1143 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[4.435396825 'A']\n",
      " [360.727324263 'Z']]\n",
      "\n",
      "Bad alignment: 1146 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [345.760589569 'Z']]\n",
      "\n",
      "Bad alignment: 1146 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[346.73467120099997 'Z']]\n",
      "\n",
      "Bad alignment: 1147 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[205.71718820799998 'Z']]\n",
      "\n",
      "Bad alignment: 1147 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[205.763265306 'Z']]\n",
      "\n",
      "Bad alignment: 1148 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [405.403832199 'Z']]\n",
      "\n",
      "Bad alignment: 1148 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.045714285 'Z']\n",
      " [404.570589569 'Z']]\n",
      "\n",
      "Bad alignment: 1149 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[191.751995464 'Z']]\n",
      "\n",
      "Bad alignment: 1149 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[191.157301587 'Z']]\n",
      "\n",
      "Bad alignment: 115  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'A']\n",
      " [7.198185941 'B']\n",
      " [124.838299319 'E']]\n",
      "\n",
      "Bad alignment: 1150 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[116.806598639 'C']\n",
      " [216.465646258 'C']\n",
      " [372.573514739 'F']\n",
      " [419.316621315 'C']\n",
      " [433.41222222199997 'Z']]\n",
      "\n",
      "Bad alignment: 1150 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[430.362131519 'Z']]\n",
      "\n",
      "Bad alignment: 1155 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[314.17664399 'E']\n",
      " [430.64229024900004 'Z']]\n",
      "\n",
      "Bad alignment: 1155 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [430.935555555 'Z']]\n",
      "\n",
      "Bad alignment: 1156 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[177.254353741 'Z']]\n",
      "\n",
      "Bad alignment: 116  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[237.453061224 'B']]\n",
      "\n",
      "Bad alignment: 1162 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[432.377505668 'Z']]\n",
      "\n",
      "Bad alignment: 1162 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[20.179591836 'B']\n",
      " [46.415011336999996 'B']\n",
      " [136.139206349 'B']\n",
      " [226.59204081599998 'B']\n",
      " [253.232267573 'B']\n",
      " [394.445623582 'B']\n",
      " [432.104648526 'Z']]\n",
      "\n",
      "Bad alignment: 1166 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[219.493990929 'Z']]\n",
      "\n",
      "Bad alignment: 1166 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.073469387 'Z']\n",
      " [135.684875283 'A']\n",
      " [219.611360544 'Z']]\n",
      "\n",
      "Bad alignment: 117  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[9.903945578 'B']\n",
      " [32.252879818000004 'C']]\n",
      "\n",
      "Bad alignment: 1170 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[384.543151927 'Z']]\n",
      "\n",
      "Bad alignment: 1170 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.044897959 'Z']\n",
      " [383.66405895599996 'Z']]\n",
      "\n",
      "Bad alignment: 1174 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [310.06560090700003 'Z']]\n",
      "\n",
      "Bad alignment: 1174 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[4.861632653 'A']\n",
      " [16.082834467 'B']\n",
      " [89.506190476 'A']\n",
      " [207.516530612 'A']\n",
      " [304.368140589 'E']\n",
      " [310.387913832 'Z']]\n",
      "\n",
      "Bad alignment: 1175 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[540.005941043 'Z']]\n",
      "\n",
      "Bad alignment: 1175 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[541.598888888 'Z']]\n",
      "\n",
      "Bad alignment: 1176 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.034829931 'Z']\n",
      " [462.059682539 'Z']]\n",
      "\n",
      "Bad alignment: 1176 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.072562358 'Z']\n",
      " [462.936757369 'Z']]\n",
      "\n",
      "Bad alignment: 118  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[68.481043083 'Z']]\n",
      "\n",
      "Bad alignment: 1183 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [183.042902494 'Z']]\n",
      "\n",
      "Bad alignment: 1184 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[434.73360544199994 'Z']]\n",
      "\n",
      "Bad alignment: 1190 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.043537414 'Z']\n",
      " [424.51034013599997 'Z']]\n",
      "\n",
      "Bad alignment: 1190 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[201.970997732 'E']\n",
      " [423.78074829900004 'Z']]\n",
      "\n",
      "Bad alignment: 1194 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[389.96714285699994 'Z']]\n",
      "\n",
      "Bad alignment: 1194 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[391.29723356 'Z']]\n",
      "\n",
      "Bad alignment: 1195 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[271.209070294 'Z']]\n",
      "\n",
      "Bad alignment: 1198 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[516.16063492 'Z']]\n",
      "\n",
      "Bad alignment: 1198 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[516.718367346 'Z']]\n",
      "\n",
      "Bad alignment: 1199 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.104489795 'Z']\n",
      " [159.040430839 'Z']]\n",
      "\n",
      "Bad alignment: 1199 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[158.429387755 'Z']]\n",
      "\n",
      "Bad alignment: 1202 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [252.390907029 'Z']]\n",
      "\n",
      "Bad alignment: 1202 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[253.61503401299998 'Z']]\n",
      "\n",
      "Bad alignment: 1203 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [398.093968253 'Z']]\n",
      "\n",
      "Bad alignment: 1203 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[398.2892517 'Z']]\n",
      "\n",
      "Bad alignment: 1204 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[593.87802721 'Z']]\n",
      "\n",
      "Bad alignment: 1204 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[595.104512471 'Z']]\n",
      "\n",
      "Bad alignment: 1206 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.65015873 'A']\n",
      " [152.41768707399999 'Z']]\n",
      "\n",
      "Bad alignment: 1206 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[151.701632653 'Z']]\n",
      "\n",
      "Bad alignment: 1211 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[180.076621315 'Z']]\n",
      "\n",
      "Bad alignment: 1212 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[513.142607709 'Z']\n",
      " [556.152721088 'Z']]\n",
      "\n",
      "Bad alignment: 1212 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[208.349297052 'D']\n",
      " [358.494897959 'D']\n",
      " [512.354897959 'E']\n",
      " [555.428571428 'Z']]\n",
      "\n",
      "Bad alignment: 1218 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.017414965 'Z']\n",
      " [342.849002267 'Z']]\n",
      "\n",
      "Bad alignment: 1218 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[342.079659863 'Z']]\n",
      "\n",
      "Bad alignment: 1222 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.057142857000000005 'Z']\n",
      " [320.600589569 'Z']]\n",
      "\n",
      "Bad alignment: 1223 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [190.606961451 'Z']]\n",
      "\n",
      "Bad alignment: 1223 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[190.60013605400002 'Z']]\n",
      "\n",
      "Bad alignment: 1226 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[135.170340136 'C']]\n",
      "\n",
      "Bad alignment: 1230 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.9632653059999999 'Z']]\n",
      "\n",
      "Bad alignment: 1230 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[89.203968253 'C']\n",
      " [190.57589569099997 'E']\n",
      " [355.205555555 'F']]\n",
      "\n",
      "Bad alignment: 1232 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[508.99165532800004 'Z']]\n",
      "\n",
      "Bad alignment: 1234 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[191.89217687 'Z']]\n",
      "\n",
      "Bad alignment: 1234 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[191.907029478 'Z']]\n",
      "\n",
      "Bad alignment: 1239 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [301.985011337 'Z']]\n",
      "\n",
      "Bad alignment: 1240 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[200.75512471599998 'Z']]\n",
      "\n",
      "Bad alignment: 1246 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.06095238 'Z']\n",
      " [321.29739229 'Z']]\n",
      "\n",
      "Bad alignment: 1246 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[70.896802721 'D']\n",
      " [170.135396825 'D']\n",
      " [256.36038548700003 'E']\n",
      " [321.155079365 'Z']]\n",
      "\n",
      "Bad alignment: 1250 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.72031746 'Z']\n",
      " [186.704489795 'Z']]\n",
      "\n",
      "Bad alignment: 1250 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.171428571 'Z']\n",
      " [187.63104308299998 'Z']]\n",
      "\n",
      "Bad alignment: 1251 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.036281179 'Z']\n",
      " [302.462698412 'Z']]\n",
      "\n",
      "Bad alignment: 1251 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[302.294739229 'Z']]\n",
      "\n",
      "Bad alignment: 1254 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[536.42739229 'Z']]\n",
      "\n",
      "Bad alignment: 1254 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[536.102312925 'Z']]\n",
      "\n",
      "Bad alignment: 1255 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[300.319342403 'Z']]\n",
      "\n",
      "Bad alignment: 1255 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[299.073015873 'Z']]\n",
      "\n",
      "Bad alignment: 1258 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[274.38956916 'E']\n",
      " [296.758276643 'Z']]\n",
      "\n",
      "Bad alignment: 1259 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [285.234285714 'Z']]\n",
      "\n",
      "Bad alignment: 1259 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[286.128367346 'Z']]\n",
      "\n",
      "Bad alignment: 1260 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[510.91519274300003 'Z']]\n",
      "\n",
      "Bad alignment: 1260 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[514.440408163 'Z']]\n",
      "\n",
      "Bad alignment: 1261 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[3.5062131510000003 'A']\n",
      " [160.098639455 'Z']]\n",
      "\n",
      "Bad alignment: 1261 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[160.49015873 'Z']]\n",
      "\n",
      "Bad alignment: 1262 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[329.32834467099997 'Z']]\n",
      "\n",
      "Bad alignment: 1262 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[327.07628117900003 'Z']]\n",
      "\n",
      "Bad alignment: 1268 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[297.119546485 'Z']]\n",
      "\n",
      "Bad alignment: 1274 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[248.13991666599998 'Z']]\n",
      "\n",
      "Bad alignment: 1274 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[213.093958333 'F']\n",
      " [249.109333333 'Z']]\n",
      "\n",
      "Bad alignment: 1278 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.9055782309999999 'Z']\n",
      " [284.444444444 'Z']]\n",
      "\n",
      "Bad alignment: 1278 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.184217687 'Z']\n",
      " [286.406077097 'Z']]\n",
      "\n",
      "Bad alignment: 1279 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[271.298299319 'Z']]\n",
      "\n",
      "Bad alignment: 1279 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[271.092970521 'Z']]\n",
      "\n",
      "Bad alignment: 1282 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[66.598140589 'F']\n",
      " [131.622312925 'F']\n",
      " [355.72047619 'F']]\n",
      "\n",
      "Bad alignment: 1283 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[241.651564625 'Z']]\n",
      "\n",
      "Bad alignment: 1283 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[240.898117913 'Z']]\n",
      "\n",
      "Bad alignment: 1286 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.052244897 'Z']\n",
      " [564.082358276 'Z']]\n",
      "\n",
      "Bad alignment: 1286 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.9039682530000002 'A']\n",
      " [132.16768707399999 'C']\n",
      " [280.919478458 'F']\n",
      " [564.299160997 'Z']]\n",
      "\n",
      "Bad alignment: 1287 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.058049885999999995 'Z']\n",
      " [569.0447165530001 \"E'\"]\n",
      " [628.9356916090001 'Z']]\n",
      "\n",
      "Bad alignment: 1287 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[628.981269841 'Z']]\n",
      "\n",
      "Bad alignment: 1288 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[269.089795918 'Z']]\n",
      "\n",
      "Bad alignment: 1288 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[269.305941043 'Z']]\n",
      "\n",
      "Bad alignment: 1290 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[324.483310657 'E']\n",
      " [326.148072562 'F']\n",
      " [335.09487528299996 'Z']]\n",
      "\n",
      "Bad alignment: 1290 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[335.138367346 'Z']]\n",
      "\n",
      "Bad alignment: 1295 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [71.41877551 'Z']]\n",
      "\n",
      "Bad alignment: 1296 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[243.97761904700002 'Z']]\n",
      "\n",
      "Bad alignment: 1296 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[244.428117913 'Z']]\n",
      "\n",
      "Bad alignment: 13   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.193741496 'B']\n",
      " [11.247414965 'C']\n",
      " [22.547256235 'B']\n",
      " [34.222562358000005 'B']\n",
      " [46.079387755 'C']\n",
      " [57.961746031000004 'B']\n",
      " [69.931156462 'B']\n",
      " [81.701609977 'C']\n",
      " [93.704965986 'B']\n",
      " [105.513061224 'B']\n",
      " [117.484965986 'C']\n",
      " [129.325056689 'C']\n",
      " [141.192811791 'B']\n",
      " [152.859115646 'B']\n",
      " [164.934013605 'C']\n",
      " [176.982108843 'C']]\n",
      "\n",
      "Bad alignment: 1301 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[248.60482993099998 'Z']]\n",
      "\n",
      "Bad alignment: 1301 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[249.382312925 'Z']]\n",
      "\n",
      "Bad alignment: 1307 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[423.45068027199994 'Z']]\n",
      "\n",
      "Bad alignment: 1307 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[423.20689342400004 'Z']]\n",
      "\n",
      "Bad alignment: 1310 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[69.108185941 'C']\n",
      " [231.392834467 'C']\n",
      " [368.229750566 'Z']]\n",
      "\n",
      "Bad alignment: 1310 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.044897959 'Z']\n",
      " [368.071088435 'Z']]\n",
      "\n",
      "Bad alignment: 1311 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[468.912721088 'Z']]\n",
      "\n",
      "Bad alignment: 1311 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[468.604081632 'Z']]\n",
      "\n",
      "Bad alignment: 1316 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[242.30022675700002 'Z']]\n",
      "\n",
      "Bad alignment: 1316 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[243.454761904 'Z']]\n",
      "\n",
      "Bad alignment: 1317 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[385.893877551 'Z']]\n",
      "\n",
      "Bad alignment: 1317 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[386.091269841 'Z']]\n",
      "\n",
      "Bad alignment: 1318 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.39473922899999997 'B']\n",
      " [197.609387755 'Z']]\n",
      "\n",
      "Bad alignment: 1318 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[197.518367346 'Z']]\n",
      "\n",
      "Bad alignment: 1323 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.110294784 'Z']\n",
      " [192.145124716 'Z']]\n",
      "\n",
      "Bad alignment: 1330 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[131.284897959 'Z']]\n",
      "\n",
      "Bad alignment: 1330 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[131.108888888 'Z']]\n",
      "\n",
      "Bad alignment: 1334 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[304.536666666 'Z']]\n",
      "\n",
      "Bad alignment: 1334 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[303.714285714 'Z']]\n",
      "\n",
      "Bad alignment: 1335 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[171.437120181 'Z']]\n",
      "\n",
      "Bad alignment: 1335 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[67.246870748 'D']\n",
      " [132.097120181 'D']\n",
      " [171.781224489 'Z']]\n",
      "\n",
      "Bad alignment: 1338 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.052244897 'Z']\n",
      " [274.34414965900004 'Z']]\n",
      "\n",
      "Bad alignment: 1338 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [274.500498866 'Z']]\n",
      "\n",
      "Bad alignment: 1339 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[218.311564625 'E']]\n",
      "\n",
      "Bad alignment: 1342 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[261.93900226700003 'Z']]\n",
      "\n",
      "Bad alignment: 1342 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[261.800725623 'Z']]\n",
      "\n",
      "Bad alignment: 1343 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.04875 'Z']\n",
      " [406.639354166 'Z']]\n",
      "\n",
      "Bad alignment: 1343 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.026666666000000002 'Z']\n",
      " [406.38375 'Z']]\n",
      "\n",
      "Bad alignment: 1344 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[299.793129251 'Z']]\n",
      "\n",
      "Bad alignment: 1346 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[291.171201814 'F']\n",
      " [595.10770975 'Z']]\n",
      "\n",
      "Bad alignment: 1346 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[595.041405895 'Z']]\n",
      "\n",
      "Bad alignment: 1351 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[437.062857142 'Z']]\n",
      "\n",
      "Bad alignment: 1351 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[437.461224489 'Z']]\n",
      "\n",
      "Bad alignment: 1352 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [360.803310657 'Z']]\n",
      "\n",
      "Bad alignment: 1352 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[361.17056689300006 'Z']]\n",
      "\n",
      "Bad alignment: 1358 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.052244897 'Z']\n",
      " [153.73655328700002 'Z']]\n",
      "\n",
      "Bad alignment: 1358 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[7.453786847999999 'A']\n",
      " [155.945215419 'Z']]\n",
      "\n",
      "Bad alignment: 1363 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[249.76063492 'Z']]\n",
      "\n",
      "Bad alignment: 1363 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[250.2 'Z']]\n",
      "\n",
      "Bad alignment: 1366 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[598.522040816 'Z']]\n",
      "\n",
      "Bad alignment: 1366 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[598.473469387 'Z']]\n",
      "\n",
      "Bad alignment: 1367 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[217.44258503400002 'Z']]\n",
      "\n",
      "Bad alignment: 1367 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[216.203492063 'Z']]\n",
      "\n",
      "Bad alignment: 1370 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[163.371428571 'Z']]\n",
      "\n",
      "Bad alignment: 1370 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[163.472358276 'Z']]\n",
      "\n",
      "Bad alignment: 1371 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.06122448900000001 'Z']\n",
      " [203.808163265 'Z']]\n",
      "\n",
      "Bad alignment: 1371 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.818820861 'Z']\n",
      " [199.066394557 'Z']]\n",
      "\n",
      "Bad alignment: 1372 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.2074376409999998 'Z']\n",
      " [325.668798185 'Z']]\n",
      "\n",
      "Bad alignment: 1372 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.160997732 'Z']\n",
      " [325.56535147299996 'Z']]\n",
      "\n",
      "Bad alignment: 1373 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[337.409659863 'Z']]\n",
      "\n",
      "Bad alignment: 1373 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [337.368344671 'Z']]\n",
      "\n",
      "Bad alignment: 1374 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[5.89786848 'A']\n",
      " [155.364716553 'Z']]\n",
      "\n",
      "Bad alignment: 1374 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[155.572448979 'Z']]\n",
      "\n",
      "Bad alignment: 1379 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[378.08916099699996 'Z']]\n",
      "\n",
      "Bad alignment: 1379 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.040816326 'Z']\n",
      " [380.295986394 'Z']]\n",
      "\n",
      "Bad alignment: 1380 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[17.534693877 'A']\n",
      " [207.808299319 'Z']]\n",
      "\n",
      "Bad alignment: 1386 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.597333333 'Z']]\n",
      "\n",
      "Bad alignment: 1386 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[194.488354166 'D']\n",
      " [531.205270833 'Z']]\n",
      "\n",
      "Bad alignment: 1390 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.04063492 'Z']\n",
      " [263.876802721 'Z']]\n",
      "\n",
      "Bad alignment: 1390 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [263.702811791 'Z']]\n",
      "\n",
      "Bad alignment: 1391 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.039183672999999995 'Z']\n",
      " [199.16149659799999 'Z']]\n",
      "\n",
      "Bad alignment: 1391 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[203.10487528299998 'Z']]\n",
      "\n",
      "Bad alignment: 1392 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[3.752040816 'Z']\n",
      " [313.403628117 'Z']]\n",
      "\n",
      "Bad alignment: 1392 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[3.856825396 'Z']\n",
      " [313.565464852 'Z']]\n",
      "\n",
      "Bad alignment: 1394 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[251.189387755 'Z']]\n",
      "\n",
      "Bad alignment: 1394 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[250.049682539 'Z']]\n",
      "\n",
      "Bad alignment: 1395 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[279.665442176 'Z']]\n",
      "\n",
      "Bad alignment: 1395 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[279.36712018099996 'Z']]\n",
      "\n",
      "Bad alignment: 1399 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.487619047 'Z']\n",
      " [176.808344671 'Z']]\n",
      "\n",
      "Bad alignment: 1399 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[176.387641723 'Z']]\n",
      "\n",
      "Bad alignment: 140  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[71.08324263 'C']]\n",
      "\n",
      "Bad alignment: 1400 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[264.39390022599997 'Z']]\n",
      "\n",
      "Bad alignment: 1400 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[262.59292517 'Z']]\n",
      "\n",
      "Bad alignment: 1402 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[669.118231292 'Z']]\n",
      "\n",
      "Bad alignment: 1402 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[669.241882086 'Z']]\n",
      "\n",
      "Bad alignment: 1407 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[320.716712018 'Z']]\n",
      "\n",
      "Bad alignment: 1407 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[316.73371882 'Z']]\n",
      "\n",
      "Bad alignment: 1408 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.034829931 'Z']\n",
      " [158.051020408 'Z']]\n",
      "\n",
      "Bad alignment: 1413 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[350.06167800400004 'Z']]\n",
      "\n",
      "Bad alignment: 1413 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.069387755 'Z']\n",
      " [349.22630385400004 'Z']]\n",
      "\n",
      "Bad alignment: 1414 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[210.822354166 'Z']]\n",
      "\n",
      "Bad alignment: 1414 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[211.18816666599997 'Z']]\n",
      "\n",
      "Bad alignment: 1415 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[249.183900226 'Z']]\n",
      "\n",
      "Bad alignment: 1418 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[218.723356009 'Z']]\n",
      "\n",
      "Bad alignment: 1418 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[221.30238095200002 'Z']]\n",
      "\n",
      "Bad alignment: 1419 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[144.9424375 'E']\n",
      " [191.55200000000002 'Z']]\n",
      "\n",
      "Bad alignment: 1420 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[188.000725623 'Z']]\n",
      "\n",
      "Bad alignment: 1420 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[197.90430839 'Z']]\n",
      "\n",
      "Bad alignment: 1422 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[199.01739229 'Z']]\n",
      "\n",
      "Bad alignment: 1422 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[198.762811791 'Z']]\n",
      "\n",
      "Bad alignment: 1423 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[373.84020408099997 'Z']]\n",
      "\n",
      "Bad alignment: 1423 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[304.700090702 'B']\n",
      " [364.11210884300004 'B']\n",
      " [373.22176870699997 'Z']]\n",
      "\n",
      "Bad alignment: 1427 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[310.750884353 'Z']]\n",
      "\n",
      "Bad alignment: 1427 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[312.102131519 'Z']]\n",
      "\n",
      "Bad alignment: 1428 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.036281179 'Z']\n",
      " [353.458911564 'Z']]\n",
      "\n",
      "Bad alignment: 1428 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[354.17993197199996 'Z']]\n",
      "\n",
      "Bad alignment: 1429 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[31.329319726999998 'B']\n",
      " [53.687324263 'B']\n",
      " [90.421814058 'B']\n",
      " [127.41934240299999 'B']\n",
      " [150.14362811700002 'C']\n",
      " [167.114013605 'Z']]\n",
      "\n",
      "Bad alignment: 1429 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[167.81371882 'Z']]\n",
      "\n",
      "Bad alignment: 143  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[236.226303854 'E']]\n",
      "\n",
      "Bad alignment: 1431 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[211.009024943 'Z']]\n",
      "\n",
      "Bad alignment: 1431 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[208.665963718 'Z']]\n",
      "\n",
      "Bad alignment: 1435 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[197.57664399 'Z']]\n",
      "\n",
      "Bad alignment: 1436 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[685.84770975 'Z']]\n",
      "\n",
      "Bad alignment: 1436 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[653.931678004 'D']\n",
      " [684.7004535140001 'Z']]\n",
      "\n",
      "Bad alignment: 1437 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[180.90260770900002 'Z']]\n",
      "\n",
      "Bad alignment: 1438 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[371.703877551 'Z']]\n",
      "\n",
      "Bad alignment: 1442 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[277.355668934 'Z']]\n",
      "\n",
      "Bad alignment: 1442 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[2.188594104 'A']\n",
      " [276.417165532 'Z']]\n",
      "\n",
      "Bad alignment: 1446 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.03047619 'Z']\n",
      " [139.016780045 'Z']\n",
      " [168.69770975 'Z']]\n",
      "\n",
      "Bad alignment: 1446 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.032653061000000004 'Z']\n",
      " [140.782040816 'Z']\n",
      " [168.67755102 'Z']]\n",
      "\n",
      "Bad alignment: 1447 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[429.084965986 'Z']]\n",
      "\n",
      "Bad alignment: 1447 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[430.40585034 'Z']]\n",
      "\n",
      "Bad alignment: 1450 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[349.98823129199997 'Z']]\n",
      "\n",
      "Bad alignment: 1450 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[349.669297052 'Z']]\n",
      "\n",
      "Bad alignment: 1451 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[139.760770975 'Z']]\n",
      "\n",
      "Bad alignment: 1454 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[212.531882086 'Z']]\n",
      "\n",
      "Bad alignment: 1454 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[212.48142857099998 'Z']]\n",
      "\n",
      "Bad alignment: 1456 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [224.374421768 'Z']]\n",
      "\n",
      "Bad alignment: 1456 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[174.985396825 'Z']\n",
      " [224.33795918299998 'Z']]\n",
      "\n",
      "Bad alignment: 1458 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[369.829047619 'Z']]\n",
      "\n",
      "Bad alignment: 1458 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[371.14657596300003 'Z']]\n",
      "\n",
      "Bad alignment: 146  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.718367346 'A']\n",
      " [30.318956915999998 'B']\n",
      " [65.69795918300001 'C']\n",
      " [94.79777777700001 'D']\n",
      " [123.68979591799999 'E']\n",
      " [157.387755102 'F']\n",
      " [190.33049886599997 'G']]\n",
      "\n",
      "Bad alignment: 1464 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[248.88464852599998 'Z']]\n",
      "\n",
      "Bad alignment: 1469 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[181.703764172 'Z']]\n",
      "\n",
      "Bad alignment: 1469 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.048979590999999996 'Z']\n",
      " [181.162086167 'Z']]\n",
      "\n",
      "Bad alignment: 1470 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[166.93095238 'Z']\n",
      " [299.766099773 'Z']]\n",
      "\n",
      "Bad alignment: 1470 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[152.508662131 'A']\n",
      " [166.654126984 'Z']]\n",
      "\n",
      "Bad alignment: 1471 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[303.621125 'Z']]\n",
      "\n",
      "Bad alignment: 1471 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[302.156583333 'Z']]\n",
      "\n",
      "Bad alignment: 1474 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.023219953999999998 'Z']\n",
      " [125.601995464 'Z']]\n",
      "\n",
      "Bad alignment: 1474 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[125.493469387 'Z']]\n",
      "\n",
      "Bad alignment: 1475 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.045714285 'Z']\n",
      " [529.838979591 'Z']]\n",
      "\n",
      "Bad alignment: 1475 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[529.557052154 'Z']]\n",
      "\n",
      "Bad alignment: 1476 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[293.584126984 'Z']]\n",
      "\n",
      "Bad alignment: 1476 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[293.53614512400003 'Z']]\n",
      "\n",
      "Bad alignment: 1477 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.046439909 'Z']\n",
      " [177.07537414900003 'Z']]\n",
      "\n",
      "Bad alignment: 1478 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[409.01956916 'Z']]\n",
      "\n",
      "Bad alignment: 1478 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.334693877 'Z']\n",
      " [409.485714285 'Z']]\n",
      "\n",
      "Bad alignment: 1479 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.8828798180000001 'A']\n",
      " [54.128435374 'B']\n",
      " [64.528253968 'C']\n",
      " [117.349387755 'D']\n",
      " [133.352199546 'E']\n",
      " [157.443922902 'F']\n",
      " [180.72090702900002 'G']\n",
      " [233.615963718 'H']\n",
      " [275.388662131 'I']\n",
      " [332.300770975 'J']]\n",
      "\n",
      "Bad alignment: 1480 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[215.28349206299998 'F']\n",
      " [319.273492063 \"F'\"]\n",
      " [329.096757369 'Z']]\n",
      "\n",
      "Bad alignment: 1480 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[329.53265306099996 'Z']]\n",
      "\n",
      "Bad alignment: 1482 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[547.942857142 'Z']]\n",
      "\n",
      "Bad alignment: 1482 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[537.054149659 'F']\n",
      " [548.3299319719999 'Z']]\n",
      "\n",
      "Bad alignment: 1483 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[544.043208333 'Z']]\n",
      "\n",
      "Bad alignment: 1483 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[544.1416875 'Z']]\n",
      "\n",
      "Bad alignment: 1484 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[536.82201814 'Z']]\n",
      "\n",
      "Bad alignment: 1485 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[302.32380952299997 'Z']]\n",
      "\n",
      "Bad alignment: 1485 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[302.623356009 'Z']]\n",
      "\n",
      "Bad alignment: 1487 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[460.712267573 'Z']]\n",
      "\n",
      "Bad alignment: 1490 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.034829931 'Z']\n",
      " [347.500453514 'Z']]\n",
      "\n",
      "Bad alignment: 1490 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[345.58877551 'Z']]\n",
      "\n",
      "Bad alignment: 1491 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[81.624104308 'Z']]\n",
      "\n",
      "Bad alignment: 1491 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[80.698049886 'Z']]\n",
      "\n",
      "Bad alignment: 1492 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[350.273015873 'Z']]\n",
      "\n",
      "Bad alignment: 1492 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[194.60664399 'C']\n",
      " [350.40931972699997 'Z']]\n",
      "\n",
      "Bad alignment: 1496 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[230.736712018 'Z']]\n",
      "\n",
      "Bad alignment: 1496 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[236.441405895 'Z']]\n",
      "\n",
      "Bad alignment: 1498 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[209.436099773 'Z']]\n",
      "\n",
      "Bad alignment: 1498 /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[203.039523809 'Z']]\n",
      "\n",
      "Bad alignment: 1502 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[239.408253968 'E']]\n",
      "\n",
      "Bad alignment: 1507 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[126.87770975 'D']\n",
      " [281.132471655 'D']\n",
      " [309.701473922 'E']\n",
      " [426.64344671199996 'G']\n",
      " [483.52072562300003 \"D'\"]]\n",
      "\n",
      "Bad alignment: 1507 /textfile1b_uppercase.txt textfile1b_lowercase.txt\n",
      "[[0.41795918299999996 'A']\n",
      " [155.186462585 'A']\n",
      " [309.701473922 'B']\n",
      " [315.989387755 'C']\n",
      " [383.315011337 \"A'\"]]\n",
      "\n",
      "Bad alignment: 1592 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[193.072426303 'G']]\n",
      "\n",
      "Bad alignment: 162  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[104.685714285 'C']\n",
      " [121.480362811 'D']]\n",
      "\n",
      "Bad alignment: 1620 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[298.13922902400003 'Z']]\n",
      "\n",
      "Bad alignment: 1644 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[172.46988662099997 'E']]\n",
      "\n",
      "Bad alignment: 1653 /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.787936507 'Z']\n",
      " [157.598752834 'Z']]\n",
      "\n",
      "Bad alignment: 173  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[72.91065759600001 'C']\n",
      " [115.922879818 'H']]\n",
      "\n",
      "Bad alignment: 19   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.264285714 'D']\n",
      " [2.998594104 'A']\n",
      " [8.349138321 'A']\n",
      " [13.800430839 'B']\n",
      " [19.261473922 'A']\n",
      " [24.540362810999998 'C']\n",
      " [29.989546485 'A']\n",
      " [35.309070294 'A']\n",
      " [40.646530612 'A']\n",
      " [46.049727891 'B']\n",
      " [51.465510204 'A']\n",
      " [56.729501133 'C']\n",
      " [62.185442176 'A']\n",
      " [67.46727891100001 'A']\n",
      " [72.773038548 'A']\n",
      " [78.162244897 'B']\n",
      " [83.497414965 'A']\n",
      " [88.82861678 'C']\n",
      " [94.29909297 'A']\n",
      " [99.503628117 'A']\n",
      " [104.747210884 'A']\n",
      " [110.038956916 'B']\n",
      " [115.41072562299999 'A']\n",
      " [120.69746031700001 'C']\n",
      " [125.97825396799999 'A']\n",
      " [131.155283446 'A']\n",
      " [136.473514739 'A']\n",
      " [141.789523809 'B']\n",
      " [147.045646258 'A']\n",
      " [152.32526077 'C']\n",
      " [157.677256235 'A']\n",
      " [162.952630385 'A']\n",
      " [168.25435374100002 'A']\n",
      " [173.493537414 'B']\n",
      " [178.805487528 'A']\n",
      " [184.014285714 'C']\n",
      " [189.30145124700002 'A']\n",
      " [194.550544217 'A']\n",
      " [199.820839002 'A']\n",
      " [205.12544217599998 'A']\n",
      " [210.385555555 'A']]\n",
      "\n",
      "Bad alignment: 19   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.288707482 'A']\n",
      " [35.242358276 'A']\n",
      " [67.38430839 'A']\n",
      " [99.466213151 'A']\n",
      " [131.099863945 'A']\n",
      " [162.87462585 'A']\n",
      " [194.51356009 \"A'\"]]\n",
      "\n",
      "Bad alignment: 197  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[12.342698412 'B']\n",
      " [70.614535147 'B']\n",
      " [218.871179138 'B']]\n",
      "\n",
      "Bad alignment: 205  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.348707482 'A']\n",
      " [10.797278911 \"A'\"]\n",
      " [21.176598639 'B']\n",
      " [30.882539681999997 'C']\n",
      " [37.337687074 'D']\n",
      " [46.119160997 'E']\n",
      " [63.506575963 'B']\n",
      " [74.652154195 'G']]\n",
      "\n",
      "Bad alignment: 21   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[362.33079365 'Z']]\n",
      "\n",
      "Bad alignment: 21   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[90.98117913799999 \"A'\"]\n",
      " [362.18623582699996 'Z']]\n",
      "\n",
      "Bad alignment: 215  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.65015873 'A']\n",
      " [11.215238095 'B']\n",
      " [16.997006802 'C']\n",
      " [27.120907029 'D']\n",
      " [39.009523809 'E']\n",
      " [44.094693877 'F']\n",
      " [50.712380952 'G']\n",
      " [59.535963718000005 'H']\n",
      " [71.772879818 'I']\n",
      " [85.556712018 'J']\n",
      " [100.35664399 'K']\n",
      " [107.94730158700001 'L']\n",
      " [113.61297052100001 'M']\n",
      " [127.38240362799999 'N']]\n",
      "\n",
      "Bad alignment: 223  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.534058956 'A']\n",
      " [67.153061224 'A']]\n",
      "\n",
      "Bad alignment: 228  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[74.187755102 'B']]\n",
      "\n",
      "Bad alignment: 26   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[301.905827664 'Z']]\n",
      "\n",
      "Bad alignment: 26   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[300.081632653 'Z']]\n",
      "\n",
      "Bad alignment: 274  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.0245578229999999 'A']]\n",
      "\n",
      "Bad alignment: 275  /textfile2b_uppercase.txt textfile2b_lowercase.txt\n",
      "[[0.037006802000000005 'A']\n",
      " [55.704671201000004 'C']\n",
      " [85.03253968199999 \"A'\"]]\n",
      "\n",
      "Bad alignment: 28   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[267.624489795 'C']\n",
      " [498.16671201800006 'Z']]\n",
      "\n",
      "Bad alignment: 28   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[485.188253968 'E']\n",
      " [499.57732426300004 'Z']]\n",
      "\n",
      "Bad alignment: 284  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[415.381768707 'E']]\n",
      "\n",
      "Bad alignment: 302  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.044897959 'A']\n",
      " [70.49959183600001 'B']\n",
      " [123.92478458 'C']\n",
      " [191.250680272 'D']\n",
      " [329.012244897 'E']\n",
      " [368.267777777 'F']]\n",
      "\n",
      "Bad alignment: 306  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.473469387 \"I'\"]\n",
      " [8.697641723 'E']\n",
      " [19.326712018 'A']\n",
      " [29.800725623 'I']\n",
      " [36.962267573000005 'E']\n",
      " [47.602199546 'A']\n",
      " [58.202222221999996 'I']\n",
      " [65.389705215 'E']\n",
      " [75.78941043 'A']\n",
      " [87.57945578200001 'I']\n",
      " [94.783854875 'E']\n",
      " [105.462471655 'A']\n",
      " [115.95095238 \"I''\"]]\n",
      "\n",
      "Bad alignment: 316  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.381632653 'V']\n",
      " [16.789002267 'V']\n",
      " [31.316825396 'C']\n",
      " [45.59573696100001 'V']\n",
      " [60.299909297 'V']\n",
      " [74.643945578 'C']\n",
      " [88.735691609 'V']\n",
      " [103.175691609 'V']\n",
      " [117.272630385 'C']\n",
      " [131.31154195 'V']\n",
      " [145.75201814 'V']\n",
      " [160.010816326 'C']\n",
      " [174.35657596299998 'V']\n",
      " [188.47138321900002 'V']\n",
      " [202.223333333 'C']]\n",
      "\n",
      "Bad alignment: 338  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[220.576712018 'F']]\n",
      "\n",
      "Bad alignment: 347  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[265.82204081599997 'Z']]\n",
      "\n",
      "Bad alignment: 348  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.029024942999999997 'A']\n",
      " [23.899138321 'B']\n",
      " [43.47356009 \"B'\"]\n",
      " [55.431836733999994 'C']\n",
      " [97.976598639 'D']]\n",
      "\n",
      "Bad alignment: 35   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[7.130022675 'D']\n",
      " [11.474988662000001 'A']\n",
      " [21.460385487 'B']\n",
      " [33.772290249 'C']\n",
      " [38.570975056 'D']\n",
      " [43.41090702899999 'A']\n",
      " [51.988004535 'B']\n",
      " [60.344693877 'C']\n",
      " [65.247845804 'D']\n",
      " [68.767437641 'A']\n",
      " [78.575873015 'B']\n",
      " [87.886281179 'C']\n",
      " [92.767052154 'D']\n",
      " [97.534489795 'A']\n",
      " [107.070181405 'B']\n",
      " [115.30181405799999 'C']\n",
      " [119.990045351 'D']\n",
      " [124.790544217 'A']\n",
      " [133.035759637 'B']\n",
      " [142.427687074 'C']\n",
      " [147.362630385 'D']\n",
      " [152.07462585 'A']\n",
      " [161.229115646 'B']\n",
      " [171.566281179 'C']\n",
      " [176.1592517 'D']\n",
      " [180.81396825299998 'A']\n",
      " [189.20478458 'B']\n",
      " [198.57995464799998 'C']\n",
      " [203.189047619 'D']\n",
      " [207.827641723 'A']\n",
      " [217.16131519200002 'B']\n",
      " [226.497346938 'C']\n",
      " [231.16834467099997 'D']\n",
      " [235.873605442 'A']\n",
      " [246.264104308 'B']\n",
      " [255.512879818 'C']\n",
      " [260.14013605400004 'D']\n",
      " [263.743764172 'A']\n",
      " [273.087641723 'B']\n",
      " [282.421428571 'C']\n",
      " [287.032630385 'D']]\n",
      "\n",
      "Bad alignment: 355  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[166.510294784 'Z']]\n",
      "\n",
      "Bad alignment: 364  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[217.997596371 'Z']]\n",
      "\n",
      "Bad alignment: 364  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[217.547142857 'Z']]\n",
      "\n",
      "Bad alignment: 366  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[244.088163265 'Z']]\n",
      "\n",
      "Bad alignment: 366  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[242.93868480700002 'Z']]\n",
      "\n",
      "Bad alignment: 378  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.185759637 'Z']\n",
      " [29.876077097 'Z']]\n",
      "\n",
      "Bad alignment: 38   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.116099773 'Z']\n",
      " [2.348979591 'A']\n",
      " [15.465941042999999 'A']\n",
      " [48.436825396 'A']\n",
      " [88.698367346 'A']\n",
      " [102.037528344 'Z']]\n",
      "\n",
      "Bad alignment: 380  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.179591836 'I']\n",
      " [10.052698412 'E']\n",
      " [19.700680272 'A']\n",
      " [29.404807255999998 'B']\n",
      " [39.092766439 'C']\n",
      " [48.916462585 'E']\n",
      " [58.573356008999994 'A']\n",
      " [68.268730158 'B']\n",
      " [78.00462585 'C']]\n",
      "\n",
      "Bad alignment: 382  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[158.186689342 'Z']]\n",
      "\n",
      "Bad alignment: 389  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[461.083628117 'Z']]\n",
      "\n",
      "Bad alignment: 389  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[2.869115646 'I']\n",
      " [460.57197278900003 'Z']]\n",
      "\n",
      "Bad alignment: 39   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[185.07664399 'Z']]\n",
      "\n",
      "Bad alignment: 392  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.371519274 'A']\n",
      " [117.82192743700001 'D']]\n",
      "\n",
      "Bad alignment: 400  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.278639455 'I']\n",
      " [9.055759637000001 'A']\n",
      " [26.424285714 'B']\n",
      " [43.746371882 'A']\n",
      " [60.487959183 'B']\n",
      " [77.415306122 'A']\n",
      " [94.319433106 'B']\n",
      " [111.339659863 'A']\n",
      " [128.499206349 'B']\n",
      " [146.007052154 'O']]\n",
      "\n",
      "Bad alignment: 404  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.273469387 'N']\n",
      " [34.11909297 'A']\n",
      " [125.289795918 'B']\n",
      " [141.35510204 'C']\n",
      " [261.044897959 'D']\n",
      " [334.236734693 'E']]\n",
      "\n",
      "Bad alignment: 405  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[12.767256235 'I']\n",
      " [310.893945578 'Z']]\n",
      "\n",
      "Bad alignment: 411  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[185.019501133 'A']]\n",
      "\n",
      "Bad alignment: 413  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[256.739750566 'D']]\n",
      "\n",
      "Bad alignment: 415  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.580498866 'A']\n",
      " [22.383673469 'A']\n",
      " [40.179591836 'B']\n",
      " [101.471201814 \"A'\"]\n",
      " [113.348321995 'C']\n",
      " [165.61632653 'A']\n",
      " [178.285714285 \"A''\"]]\n",
      "\n",
      "Bad alignment: 416  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[242.54 'Z']]\n",
      "\n",
      "Bad alignment: 416  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[241.789387755 'Z']]\n",
      "\n",
      "Bad alignment: 427  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[70.38517006800001 'B']]\n",
      "\n",
      "Bad alignment: 430  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[188.61773242599998 'Z']]\n",
      "\n",
      "Bad alignment: 430  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[188.17430839 'Z']]\n",
      "\n",
      "Bad alignment: 434  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.542471655 'I']]\n",
      "\n",
      "Bad alignment: 436  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[585.217891156 'Z']]\n",
      "\n",
      "Bad alignment: 439  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[103.076031746 'E']]\n",
      "\n",
      "Bad alignment: 444  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[485.235396825 'Z']]\n",
      "\n",
      "Bad alignment: 446  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.597913832 'Z']\n",
      " [167.51532879799998 'Z']]\n",
      "\n",
      "Bad alignment: 446  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.44081632600000004 'Z']\n",
      " [166.398911564 'Z']]\n",
      "\n",
      "Bad alignment: 450  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[85.834739229 'D']]\n",
      "\n",
      "Bad alignment: 453  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[27.053696145 'B']\n",
      " [72.625192743 'E']]\n",
      "\n",
      "Bad alignment: 455  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.917188208 'Z']\n",
      " [230.302040816 'Z']]\n",
      "\n",
      "Bad alignment: 455  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.783673469 'Z']]\n",
      "\n",
      "Bad alignment: 456  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[201.769024943 'Z']]\n",
      "\n",
      "Bad alignment: 456  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[198.945600907 'Z']]\n",
      "\n",
      "Bad alignment: 470  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[228.98201814 'Z']]\n",
      "\n",
      "Bad alignment: 475  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[9.154489795 'D']\n",
      " [129.663628117 'D']\n",
      " [182.545396825 'D']]\n",
      "\n",
      "Bad alignment: 476  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[44.025034013 'C']\n",
      " [175.985238095 'C']\n",
      " [374.425306122 'C']\n",
      " [569.5050566890001 'Z']]\n",
      "\n",
      "Bad alignment: 480  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[330.074512471 'Z']]\n",
      "\n",
      "Bad alignment: 480  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[330.400408163 'Z']]\n",
      "\n",
      "Bad alignment: 482  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[29.767936506999998 'D']]\n",
      "\n",
      "Bad alignment: 492  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[140.76739229 'Z']]\n",
      "\n",
      "Bad alignment: 493  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[152.749841269 'Z']]\n",
      "\n",
      "Bad alignment: 493  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[152.86530612200002 'Z']]\n",
      "\n",
      "Bad alignment: 501  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[295.674920634 'Z']]\n",
      "\n",
      "Bad alignment: 501  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[294.66235827599996 'Z']]\n",
      "\n",
      "Bad alignment: 508  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[396.49773242599997 'Z']]\n",
      "\n",
      "Bad alignment: 508  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[396.457505668 'Z']]\n",
      "\n",
      "Bad alignment: 530  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.383129251 'Z']\n",
      " [249.626893424 'Z']]\n",
      "\n",
      "Bad alignment: 535  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.097959183 'A']\n",
      " [66.97170068 'E']\n",
      " [183.57095238 'E']\n",
      " [209.75789115599997 'E']]\n",
      "\n",
      "Bad alignment: 54   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[171.348480725 'Z']]\n",
      "\n",
      "Bad alignment: 54   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[171.591587301 'Z']]\n",
      "\n",
      "Bad alignment: 540  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.4 'V']\n",
      " [11.826825395999998 'W']\n",
      " [21.223038547999998 'V']\n",
      " [32.089977324 'W']\n",
      " [42.358253968 'C']\n",
      " [50.086621315 'D']\n",
      " [56.838321995 'C']\n",
      " [64.894331065 'D']\n",
      " [75.070657596 'Z']]\n",
      "\n",
      "Bad alignment: 551  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[3.4862811789999997 'Z']\n",
      " [248.92730158700002 'Z']]\n",
      "\n",
      "Bad alignment: 551  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[2.024489795 'Z']\n",
      " [247.2 'Z']]\n",
      "\n",
      "Bad alignment: 558  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.17551020399999998 'V']\n",
      " [9.349727891 'W']\n",
      " [18.381247165 'V']\n",
      " [27.405328798000003 'W']\n",
      " [36.413968253 'V']\n",
      " [45.541043083000005 'W']\n",
      " [54.538548752 'V']\n",
      " [63.621904761 'W']\n",
      " [72.725056689 'V']\n",
      " [81.91705215399999 'W']\n",
      " [90.877052154 'V']\n",
      " [100.005056689 'W']\n",
      " [109.154807256 'V']\n",
      " [118.22886621299999 'W']\n",
      " [127.27054421700001 'V']\n",
      " [136.31331065700002 'W']\n",
      " [145.16600907 'V']\n",
      " [154.125306122 'Z']]\n",
      "\n",
      "Bad alignment: 566  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[152.044263038 'E']]\n",
      "\n",
      "Bad alignment: 568  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.464399092 'Z']\n",
      " [599.349863945 'Z']]\n",
      "\n",
      "Bad alignment: 58   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[207.412244897 'E']\n",
      " [300.125192743 'F']]\n",
      "\n",
      "Bad alignment: 587  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[111.719614512 'D']]\n",
      "\n",
      "Bad alignment: 588  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[77.92884353699999 'B']\n",
      " [202.724353741 'B']\n",
      " [299.41462585 \"B'\"]]\n",
      "\n",
      "Bad alignment: 60   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[91.347301587 'B']]\n",
      "\n",
      "Bad alignment: 600  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[195.55632653 'Z']]\n",
      "\n",
      "Bad alignment: 608  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[112.861088435 'Z']]\n",
      "\n",
      "Bad alignment: 608  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[112.844965986 'Z']]\n",
      "\n",
      "Bad alignment: 620  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[101.88911564600001 'D']]\n",
      "\n",
      "Bad alignment: 621  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[125.07458049799999 'A']]\n",
      "\n",
      "Bad alignment: 622  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[339.298117913 'C']]\n",
      "\n",
      "Bad alignment: 634  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[237.66814058900002 'Z']]\n",
      "\n",
      "Bad alignment: 654  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[2.29877551 'Z']]\n",
      "\n",
      "Bad alignment: 661  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.705306122 'Z']]\n",
      "\n",
      "Bad alignment: 666  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[15.388344670999999 \"A'\"]\n",
      " [28.452721088 'B']\n",
      " [38.218639455 'C']]\n",
      "\n",
      "Bad alignment: 669  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[60.057755102 'B']\n",
      " [100.76095238 'B']]\n",
      "\n",
      "Bad alignment: 670  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.020702947 'Z']\n",
      " [340.146938775 'Z']]\n",
      "\n",
      "Bad alignment: 670  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[340.591133786 'Z']]\n",
      "\n",
      "Bad alignment: 674  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[122.372947845 'D']]\n",
      "\n",
      "Bad alignment: 676  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.525145833 'A']\n",
      " [55.9828125 'A']]\n",
      "\n",
      "Bad alignment: 678  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[563.7053514730001 'Z']]\n",
      "\n",
      "Bad alignment: 678  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[562.3176417230001 'Z']]\n",
      "\n",
      "Bad alignment: 68   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.6030158730000001 'A']\n",
      " [223.468843537 'B']\n",
      " [362.166984126 'C']]\n",
      "\n",
      "Bad alignment: 683  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[57.853446712 'B']\n",
      " [130.082131519 'B']]\n",
      "\n",
      "Bad alignment: 688  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[127.426031746 'C']]\n",
      "\n",
      "Bad alignment: 694  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[150.60462585 'Z']]\n",
      "\n",
      "Bad alignment: 700  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[2.818730158 'A']\n",
      " [274.256077097 'Z']]\n",
      "\n",
      "Bad alignment: 731  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.232199546 'A']\n",
      " [2.3776870740000002 'B']\n",
      " [22.822675736 'C']\n",
      " [50.615578231 'D']\n",
      " [68.790430839 'E']\n",
      " [70.785578231 'G']\n",
      " [85.077913832 'F']\n",
      " [105.569342403 'E']\n",
      " [107.734512471 'H']\n",
      " [120.250748299 'I']\n",
      " [140.549682539 \"G'\"]\n",
      " [152.674512471 'E']]\n",
      "\n",
      "Bad alignment: 731  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[162.292970521 'Z']]\n",
      "\n",
      "Bad alignment: 733  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[88.120680272 'B']\n",
      " [154.78877551 'D']]\n",
      "\n",
      "Bad alignment: 748  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[227.571224489 'Z']]\n",
      "\n",
      "Bad alignment: 748  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[228.04013605400002 'Z']]\n",
      "\n",
      "Bad alignment: 750  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.175510204 'A']\n",
      " [111.904126984 'B']\n",
      " [206.378956916 'C']\n",
      " [290.132358276 'D']\n",
      " [336.522448979 'E']]\n",
      "\n",
      "Bad alignment: 750  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[262.234240362 'G']\n",
      " [336.81897959099996 'F']]\n",
      "\n",
      "Bad alignment: 755  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[194.72634920599998 'B']\n",
      " [221.23324263 'E']\n",
      " [240.832222222 'F']\n",
      " [251.750226757 'E']\n",
      " [278.848911564 'G']]\n",
      "\n",
      "Bad alignment: 757  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[3.482653061 'A']\n",
      " [24.433219954000002 'B']\n",
      " [52.094920634 'C']\n",
      " [65.899024943 'D']\n",
      " [78.53213151899999 'C']\n",
      " [95.418185941 'B']\n",
      " [119.966371882 'C']\n",
      " [143.965736961 'A']]\n",
      "\n",
      "Bad alignment: 759  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.449319727 'A']\n",
      " [15.059773242 'B']\n",
      " [36.905804988 'C']\n",
      " [51.401247165 'D']\n",
      " [73.183356009 'B']\n",
      " [91.29777777700001 'C']\n",
      " [105.887800453 'E']\n",
      " [127.63328798100001 'F']\n",
      " [142.204693877 \"B'\"]\n",
      " [145.835464852 'C']\n",
      " [156.746213151 'B']\n",
      " [174.88034013599997 'E']\n",
      " [189.46333333299998 'G']]\n",
      "\n",
      "Bad alignment: 760  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.30798185899999997 'B']\n",
      " [92.485079365 'F']\n",
      " [143.754739229 'F']]\n",
      "\n",
      "Bad alignment: 762  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[44.0330839 'B']\n",
      " [87.030045351 'C']\n",
      " [140.73900226700002 'D']\n",
      " [201.670090702 'E']\n",
      " [228.473469387 'E']\n",
      " [278.69387755099996 'F']\n",
      " [301.91895691599996 'C']\n",
      " [326.95510204 'D']]\n",
      "\n",
      "Bad alignment: 765  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[161.469387755 \"B'\"]]\n",
      "\n",
      "Bad alignment: 768  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.371519274 'A']\n",
      " [53.087936506999995 'A']\n",
      " [121.991836734 'A']\n",
      " [192.86494331 'A']]\n",
      "\n",
      "Bad alignment: 775  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[159.07585034 \"A''\"]]\n",
      "\n",
      "Bad alignment: 778  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[22.407936507 'B']]\n",
      "\n",
      "Bad alignment: 78   /textfile2b_uppercase.txt textfile2b_lowercase.txt\n",
      "[[0.6965986390000001 'A']\n",
      " [212.808820861 'B']\n",
      " [274.261723356 'C']\n",
      " [402.027369614 'D']]\n",
      "\n",
      "Bad alignment: 783  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[33.22462585 'C']\n",
      " [74.97297052100001 'C']\n",
      " [116.58188208600001 'C']\n",
      " [183.79827664299998 'C']\n",
      " [221.58367346900002 'Z']]\n",
      "\n",
      "Bad alignment: 783  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[222.187755102 'Z']]\n",
      "\n",
      "Bad alignment: 789  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[208.388458049 'Z']]\n",
      "\n",
      "Bad alignment: 789  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[208.259773242 'Z']]\n",
      "\n",
      "Bad alignment: 790  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.185759637 'Z']\n",
      " [177.67909297 'Z']]\n",
      "\n",
      "Bad alignment: 795  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[1.167097505 'Z']\n",
      " [209.173696145 'Z']]\n",
      "\n",
      "Bad alignment: 796  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.255419501 'B']\n",
      " [64.11979591800001 'D']]\n",
      "\n",
      "Bad alignment: 816  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[45.836190476000006 'E']\n",
      " [106.053605442 'E']]\n",
      "\n",
      "Bad alignment: 818  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[119.374399092 'C']\n",
      " [152.289931972 'C']\n",
      " [179.76292517 'C']\n",
      " [207.347142857 'C']]\n",
      "\n",
      "Bad alignment: 829  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[151.42736961399999 'Z']]\n",
      "\n",
      "Bad alignment: 829  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[151.579863945 'Z']]\n",
      "\n",
      "Bad alignment: 839  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[195.92997732400002 'F']]\n",
      "\n",
      "Bad alignment: 843  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[174.842743764 'E']]\n",
      "\n",
      "Bad alignment: 845  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[62.767437641 'C']\n",
      " [107.56721088399999 'C']\n",
      " [156.409954648 'E']]\n",
      "\n",
      "Bad alignment: 846  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[88.11972789100001 'C']\n",
      " [133.236099773 \"C'\"]\n",
      " [164.466938775 'D']\n",
      " [240.51229024900002 'C']]\n",
      "\n",
      "Bad alignment: 85   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.38605442100000004 'A']\n",
      " [29.894603174 'B']\n",
      " [52.402154195 'A']\n",
      " [66.863764172 'B']\n",
      " [89.410839002 'A']\n",
      " [99.630816326 'B']\n",
      " [114.990453514 'C']\n",
      " [136.990657596 'D']\n",
      " [168.580090702 'E']]\n",
      "\n",
      "Bad alignment: 850  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[112.06260770899999 'F']]\n",
      "\n",
      "Bad alignment: 856  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[378.23886621300005 'Z']]\n",
      "\n",
      "Bad alignment: 86   /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[404.640204081 'F']]\n",
      "\n",
      "Bad alignment: 862  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.162539682 'A']\n",
      " [240.806621315 'D']\n",
      " [316.8 'F']\n",
      " [364.911405895 'G']\n",
      " [397.61632653 'H']\n",
      " [479.771428571 'J']\n",
      " [539.667165532 'Z']]\n",
      "\n",
      "Bad alignment: 867  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[42.970657596 'C']\n",
      " [98.72426303799999 'C']\n",
      " [100.551927437 'B']\n",
      " [127.72900226700001 'C']\n",
      " [138.592312925 'Z']]\n",
      "\n",
      "Bad alignment: 869  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[17.644240362 'A']\n",
      " [28.886757369 'B']\n",
      " [44.117891156000006 'C']\n",
      " [54.645034013 'B']\n",
      " [69.664829931 'C']\n",
      " [78.994285714 'B']\n",
      " [94.070068027 'C']\n",
      " [104.373696145 'B']\n",
      " [118.805555555 'B']\n",
      " [133.34575963700001 'C']\n",
      " [144.165691609 'B']\n",
      " [158.780680272 'C']]\n",
      "\n",
      "Bad alignment: 871  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[128.817619047 'Z']]\n",
      "\n",
      "Bad alignment: 871  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[128.82430839 'Z']]\n",
      "\n",
      "Bad alignment: 874  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[50.13664399 'B']\n",
      " [102.02777777700001 'B']\n",
      " [149.768707482 'B']]\n",
      "\n",
      "Bad alignment: 878  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1710.9159183670001 'Z']]\n",
      "\n",
      "Bad alignment: 88   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[203.85827664299998 'F']]\n",
      "\n",
      "Bad alignment: 886  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[325.58600907 'Z']]\n",
      "\n",
      "Bad alignment: 90   /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[246.07346938700002 'E']\n",
      " [480.764716553 'G']\n",
      " [530.908956916 'H']\n",
      " [548.062426303 'I']\n",
      " [606.040816326 'J']\n",
      " [865.18632653 'M']\n",
      " [900.384829931 'N']\n",
      " [918.4779818589999 'O']\n",
      " [976.0345124710001 \"N'\"]\n",
      " [984.1709977319999 'Q']]\n",
      "\n",
      "Bad alignment: 908  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[126.380453514 'D']]\n",
      "\n",
      "Bad alignment: 910  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[95.070702947 'C']]\n",
      "\n",
      "Bad alignment: 915  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[82.45151927399999 'J']]\n",
      "\n",
      "Bad alignment: 917  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.455736961 'A']\n",
      " [7.787210883999999 'B']\n",
      " [15.199909297 'C']\n",
      " [17.117664399000002 'A']\n",
      " [24.378299319 'B']\n",
      " [31.88941043 'C']\n",
      " [34.697573696 'A']\n",
      " [41.514376417 'B']\n",
      " [48.93727891100001 'C']\n",
      " [51.616757369 'A']\n",
      " [59.665464852 'B']]\n",
      "\n",
      "Bad alignment: 923  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.314875283 'A']\n",
      " [3.59909297 'B']]\n",
      "\n",
      "Bad alignment: 928  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.348299319 'A']\n",
      " [18.825963718 'B']\n",
      " [30.046621315 'A']\n",
      " [47.976417233 'B']\n",
      " [59.394104308 'A']\n",
      " [77.05396825300001 'B']\n",
      " [88.11972789100001 'A']\n",
      " [106.19201814 'B']\n",
      " [117.509455782 'A']\n",
      " [135.269750566 'B']\n",
      " [146.34548752799998 'A']\n",
      " [164.299705215 'B']\n",
      " [175.48820861599998 'A']]\n",
      "\n",
      "Bad alignment: 940  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.522448979 'Z']\n",
      " [406.133764172 'Z']]\n",
      "\n",
      "Bad alignment: 946  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[72.81063492 'B']\n",
      " [127.01170068 'B']]\n",
      "\n",
      "Bad alignment: 951  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[79.50199546399999 'D']]\n",
      "\n",
      "Bad alignment: 955  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[203.092653061 'Z']]\n",
      "\n",
      "Bad alignment: 956  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[307.266802721 'Z']]\n",
      "\n",
      "Bad alignment: 956  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.048979590999999996 'Z']\n",
      " [309.83340136 'Z']]\n",
      "\n",
      "Bad alignment: 957  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[184.19260770900001 'Z']]\n",
      "\n",
      "Bad alignment: 959  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[664.569818594 'Z']]\n",
      "\n",
      "Bad alignment: 959  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[665.414240362 'Z']]\n",
      "\n",
      "Bad alignment: 960  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[276.901043083 'E']\n",
      " [288.995555555 'Z']]\n",
      "\n",
      "Bad alignment: 963  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[243.698526077 'Z']]\n",
      "\n",
      "Bad alignment: 963  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[243.43303854799998 'Z']]\n",
      "\n",
      "Bad alignment: 965  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[519.717074829 'Z']]\n",
      "\n",
      "Bad alignment: 965  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[518.669387755 'Z']]\n",
      "\n",
      "Bad alignment: 967  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[161.648888888 'Z']]\n",
      "\n",
      "Bad alignment: 967  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[161.86918367299998 'Z']\n",
      " [619.276190476 'Z']]\n",
      "\n",
      "Bad alignment: 971  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[239.005714285 'Z']]\n",
      "\n",
      "Bad alignment: 971  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[241.07224489700002 'Z']]\n",
      "\n",
      "Bad alignment: 972  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[177.72632653 'Z']]\n",
      "\n",
      "Bad alignment: 972  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[178.099977324 'Z']]\n",
      "\n",
      "Bad alignment: 973  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[376.90630385400004 'Z']]\n",
      "\n",
      "Bad alignment: 973  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[376.8830839 'Z']]\n",
      "\n",
      "Bad alignment: 974  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[183.42603174599998 'Z']]\n",
      "\n",
      "Bad alignment: 975  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[413.155079365 'Z']]\n",
      "\n",
      "Bad alignment: 975  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[412.595374149 'Z']]\n",
      "\n",
      "Bad alignment: 976  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[228.07229024900002 'Z']]\n",
      "\n",
      "Bad alignment: 976  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[227.97351473900002 'Z']]\n",
      "\n",
      "Bad alignment: 978  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.236734693 'Z']\n",
      " [655.110204081 'Z']]\n",
      "\n",
      "Bad alignment: 978  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[655.1299546480001 'Z']]\n",
      "\n",
      "Bad alignment: 979  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[127.580816326 'Z']]\n",
      "\n",
      "Bad alignment: 979  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[127.593650793 'Z']]\n",
      "\n",
      "Bad alignment: 980  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[251.63464852599998 'Z']]\n",
      "\n",
      "Bad alignment: 981  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[161.587664399 'Z']]\n",
      "\n",
      "Bad alignment: 981  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[161.657324263 'Z']]\n",
      "\n",
      "Bad alignment: 982  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[1.114557823 'A']\n",
      " [365.141609977 'Z']]\n",
      "\n",
      "Bad alignment: 982  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[364.94188208599996 'Z']]\n",
      "\n",
      "Bad alignment: 988  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[397.669274376 'Z']]\n",
      "\n",
      "Bad alignment: 988  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[397.683605442 'Z']]\n",
      "\n",
      "Bad alignment: 991  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[321.440045351 'Z']]\n",
      "\n",
      "Bad alignment: 991  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[321.05306122400003 'Z']]\n",
      "\n",
      "Bad alignment: 994  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[0.092879818 'Z']\n",
      " [234.80095238 'Z']]\n",
      "\n",
      "Bad alignment: 994  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[233.987482993 'Z']]\n",
      "\n",
      "Bad alignment: 997  /textfile1_uppercase.txt textfile1_lowercase.txt\n",
      "[[2.4380952380000003 'Z']\n",
      " [368.055895691 'Z']]\n",
      "\n",
      "Bad alignment: 997  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[7.3375056679999995 'Z']\n",
      " [367.98950113300003 'Z']]\n",
      "\n",
      "Bad alignment: 999  /textfile2_uppercase.txt textfile2_lowercase.txt\n",
      "[[0.766984126 'A']\n",
      " [580.1142857140001 'D']]\n",
      "\n",
      "\n"
     ]
    }
   ],
   "source": [
    "# If the closest lower boundary to an upper is more than this value,\n",
    "# then it's a mistake\n",
    "THRESHOLD = 0.5\n",
    "\n",
    "bad_files = defaultdict(list)\n",
    "\n",
    "for upf, lowf in tqdm(zip(uppers, lowers), total=len(uppers)):\n",
    "    # Load the uppers and lowers\n",
    "    df1 = read_file(upf)\n",
    "    df2 = read_file(lowf)\n",
    "    \n",
    "    # Build the time alignment matrix\n",
    "    # deviation[i] is the smallest time difference between an upper boundary and its closest lower\n",
    "    deviation = np.abs(np.subtract.outer(df1.time, df2.time)).min(axis=1)\n",
    "\n",
    "    idnum = track_id(upf)\n",
    "    \n",
    "    if (deviation > THRESHOLD).any():\n",
    "        print('Bad alignment: {:5s}/{:s} {:s}\\n{}\\n'.format(idnum,\n",
    "                                                       os.path.basename(upf),os.path.basename(lowf),\n",
    "                                                       df1.iloc[deviation > 0].values))\n",
    "        bad_files[idnum].append(os.path.basename(upf))\n",
    "        \n",
    "bad_files = dict(bad_files)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
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       " '434': ['textfile2_uppercase.txt'],\n",
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