API tools faq
paste
Advertisement
nachoseret

HG03476

nachoseret
May 16th, 2016
262
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 18.76 KB | None | 0 0
raw download clone embed print report
  1. ##fileformat=VCFv4.1
  2. ##FILTER=<ID=PASS,Description="All filters passed">
  3. ##fileDate=20150218
  4. ##reference=ftp://ftp.1000genomes.ebi.ac.uk//vol1/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz
  5. ##source=1000GenomesPhase3Pipeline
  6. ##contig=<ID=1,assembly=b37,length=249250621>
  7. ##contig=<ID=2,assembly=b37,length=243199373>
  8. ##contig=<ID=3,assembly=b37,length=198022430>
  9. ##contig=<ID=4,assembly=b37,length=191154276>
  10. ##contig=<ID=5,assembly=b37,length=180915260>
  11. ##contig=<ID=6,assembly=b37,length=171115067>
  12. ##contig=<ID=7,assembly=b37,length=159138663>
  13. ##contig=<ID=8,assembly=b37,length=146364022>
  14. ##contig=<ID=9,assembly=b37,length=141213431>
  15. ##contig=<ID=10,assembly=b37,length=135534747>
  16. ##contig=<ID=11,assembly=b37,length=135006516>
  17. ##contig=<ID=12,assembly=b37,length=133851895>
  18. ##contig=<ID=13,assembly=b37,length=115169878>
  19. ##contig=<ID=14,assembly=b37,length=107349540>
  20. ##contig=<ID=15,assembly=b37,length=102531392>
  21. ##contig=<ID=16,assembly=b37,length=90354753>
  22. ##contig=<ID=17,assembly=b37,length=81195210>
  23. ##contig=<ID=18,assembly=b37,length=78077248>
  24. ##contig=<ID=19,assembly=b37,length=59128983>
  25. ##contig=<ID=20,assembly=b37,length=63025520>
  26. ##contig=<ID=21,assembly=b37,length=48129895>
  27. ##contig=<ID=22,assembly=b37,length=51304566>
  28. ##contig=<ID=GL000191.1,assembly=b37,length=106433>
  29. ##contig=<ID=GL000192.1,assembly=b37,length=547496>
  30. ##contig=<ID=GL000193.1,assembly=b37,length=189789>
  31. ##contig=<ID=GL000194.1,assembly=b37,length=191469>
  32. ##contig=<ID=GL000195.1,assembly=b37,length=182896>
  33. ##contig=<ID=GL000196.1,assembly=b37,length=38914>
  34. ##contig=<ID=GL000197.1,assembly=b37,length=37175>
  35. ##contig=<ID=GL000198.1,assembly=b37,length=90085>
  36. ##contig=<ID=GL000199.1,assembly=b37,length=169874>
  37. ##contig=<ID=GL000200.1,assembly=b37,length=187035>
  38. ##contig=<ID=GL000201.1,assembly=b37,length=36148>
  39. ##contig=<ID=GL000202.1,assembly=b37,length=40103>
  40. ##contig=<ID=GL000203.1,assembly=b37,length=37498>
  41. ##contig=<ID=GL000204.1,assembly=b37,length=81310>
  42. ##contig=<ID=GL000205.1,assembly=b37,length=174588>
  43. ##contig=<ID=GL000206.1,assembly=b37,length=41001>
  44. ##contig=<ID=GL000207.1,assembly=b37,length=4262>
  45. ##contig=<ID=GL000208.1,assembly=b37,length=92689>
  46. ##contig=<ID=GL000209.1,assembly=b37,length=159169>
  47. ##contig=<ID=GL000210.1,assembly=b37,length=27682>
  48. ##contig=<ID=GL000211.1,assembly=b37,length=166566>
  49. ##contig=<ID=GL000212.1,assembly=b37,length=186858>
  50. ##contig=<ID=GL000213.1,assembly=b37,length=164239>
  51. ##contig=<ID=GL000214.1,assembly=b37,length=137718>
  52. ##contig=<ID=GL000215.1,assembly=b37,length=172545>
  53. ##contig=<ID=GL000216.1,assembly=b37,length=172294>
  54. ##contig=<ID=GL000217.1,assembly=b37,length=172149>
  55. ##contig=<ID=GL000218.1,assembly=b37,length=161147>
  56. ##contig=<ID=GL000219.1,assembly=b37,length=179198>
  57. ##contig=<ID=GL000220.1,assembly=b37,length=161802>
  58. ##contig=<ID=GL000221.1,assembly=b37,length=155397>
  59. ##contig=<ID=GL000222.1,assembly=b37,length=186861>
  60. ##contig=<ID=GL000223.1,assembly=b37,length=180455>
  61. ##contig=<ID=GL000224.1,assembly=b37,length=179693>
  62. ##contig=<ID=GL000225.1,assembly=b37,length=211173>
  63. ##contig=<ID=GL000226.1,assembly=b37,length=15008>
  64. ##contig=<ID=GL000227.1,assembly=b37,length=128374>
  65. ##contig=<ID=GL000228.1,assembly=b37,length=129120>
  66. ##contig=<ID=GL000229.1,assembly=b37,length=19913>
  67. ##contig=<ID=GL000230.1,assembly=b37,length=43691>
  68. ##contig=<ID=GL000231.1,assembly=b37,length=27386>
  69. ##contig=<ID=GL000232.1,assembly=b37,length=40652>
  70. ##contig=<ID=GL000233.1,assembly=b37,length=45941>
  71. ##contig=<ID=GL000234.1,assembly=b37,length=40531>
  72. ##contig=<ID=GL000235.1,assembly=b37,length=34474>
  73. ##contig=<ID=GL000236.1,assembly=b37,length=41934>
  74. ##contig=<ID=GL000237.1,assembly=b37,length=45867>
  75. ##contig=<ID=GL000238.1,assembly=b37,length=39939>
  76. ##contig=<ID=GL000239.1,assembly=b37,length=33824>
  77. ##contig=<ID=GL000240.1,assembly=b37,length=41933>
  78. ##contig=<ID=GL000241.1,assembly=b37,length=42152>
  79. ##contig=<ID=GL000242.1,assembly=b37,length=43523>
  80. ##contig=<ID=GL000243.1,assembly=b37,length=43341>
  81. ##contig=<ID=GL000244.1,assembly=b37,length=39929>
  82. ##contig=<ID=GL000245.1,assembly=b37,length=36651>
  83. ##contig=<ID=GL000246.1,assembly=b37,length=38154>
  84. ##contig=<ID=GL000247.1,assembly=b37,length=36422>
  85. ##contig=<ID=GL000248.1,assembly=b37,length=39786>
  86. ##contig=<ID=GL000249.1,assembly=b37,length=38502>
  87. ##contig=<ID=MT,assembly=b37,length=16569>
  88. ##contig=<ID=NC_007605,assembly=b37,length=171823>
  89. ##contig=<ID=X,assembly=b37,length=155270560>
  90. ##contig=<ID=Y,assembly=b37,length=59373566>
  91. ##contig=<ID=hs37d5,assembly=b37,length=35477943>
  92. ##ALT=<ID=CNV,Description="Copy Number Polymorphism">
  93. ##ALT=<ID=DEL,Description="Deletion">
  94. ##ALT=<ID=DUP,Description="Duplication">
  95. ##ALT=<ID=INS:ME:ALU,Description="Insertion of ALU element">
  96. ##ALT=<ID=INS:ME:LINE1,Description="Insertion of LINE1 element">
  97. ##ALT=<ID=INS:ME:SVA,Description="Insertion of SVA element">
  98. ##ALT=<ID=INS:MT,Description="Nuclear Mitochondrial Insertion">
  99. ##ALT=<ID=INV,Description="Inversion">
  100. ##ALT=<ID=CN0,Description="Copy number allele: 0 copies">
  101. ##ALT=<ID=CN1,Description="Copy number allele: 1 copy">
  102. ##ALT=<ID=CN2,Description="Copy number allele: 2 copies">
  103. ##ALT=<ID=CN3,Description="Copy number allele: 3 copies">
  104. ##ALT=<ID=CN4,Description="Copy number allele: 4 copies">
  105. ##ALT=<ID=CN5,Description="Copy number allele: 5 copies">
  106. ##ALT=<ID=CN6,Description="Copy number allele: 6 copies">
  107. ##ALT=<ID=CN7,Description="Copy number allele: 7 copies">
  108. ##ALT=<ID=CN8,Description="Copy number allele: 8 copies">
  109. ##ALT=<ID=CN9,Description="Copy number allele: 9 copies">
  110. ##ALT=<ID=CN10,Description="Copy number allele: 10 copies">
  111. ##ALT=<ID=CN11,Description="Copy number allele: 11 copies">
  112. ##ALT=<ID=CN12,Description="Copy number allele: 12 copies">
  113. ##ALT=<ID=CN13,Description="Copy number allele: 13 copies">
  114. ##ALT=<ID=CN14,Description="Copy number allele: 14 copies">
  115. ##ALT=<ID=CN15,Description="Copy number allele: 15 copies">
  116. ##ALT=<ID=CN16,Description="Copy number allele: 16 copies">
  117. ##ALT=<ID=CN17,Description="Copy number allele: 17 copies">
  118. ##ALT=<ID=CN18,Description="Copy number allele: 18 copies">
  119. ##ALT=<ID=CN19,Description="Copy number allele: 19 copies">
  120. ##ALT=<ID=CN20,Description="Copy number allele: 20 copies">
  121. ##ALT=<ID=CN21,Description="Copy number allele: 21 copies">
  122. ##ALT=<ID=CN22,Description="Copy number allele: 22 copies">
  123. ##ALT=<ID=CN23,Description="Copy number allele: 23 copies">
  124. ##ALT=<ID=CN24,Description="Copy number allele: 24 copies">
  125. ##ALT=<ID=CN25,Description="Copy number allele: 25 copies">
  126. ##ALT=<ID=CN26,Description="Copy number allele: 26 copies">
  127. ##ALT=<ID=CN27,Description="Copy number allele: 27 copies">
  128. ##ALT=<ID=CN28,Description="Copy number allele: 28 copies">
  129. ##ALT=<ID=CN29,Description="Copy number allele: 29 copies">
  130. ##ALT=<ID=CN30,Description="Copy number allele: 30 copies">
  131. ##ALT=<ID=CN31,Description="Copy number allele: 31 copies">
  132. ##ALT=<ID=CN32,Description="Copy number allele: 32 copies">
  133. ##ALT=<ID=CN33,Description="Copy number allele: 33 copies">
  134. ##ALT=<ID=CN34,Description="Copy number allele: 34 copies">
  135. ##ALT=<ID=CN35,Description="Copy number allele: 35 copies">
  136. ##ALT=<ID=CN36,Description="Copy number allele: 36 copies">
  137. ##ALT=<ID=CN37,Description="Copy number allele: 37 copies">
  138. ##ALT=<ID=CN38,Description="Copy number allele: 38 copies">
  139. ##ALT=<ID=CN39,Description="Copy number allele: 39 copies">
  140. ##ALT=<ID=CN40,Description="Copy number allele: 40 copies">
  141. ##ALT=<ID=CN41,Description="Copy number allele: 41 copies">
  142. ##ALT=<ID=CN42,Description="Copy number allele: 42 copies">
  143. ##ALT=<ID=CN43,Description="Copy number allele: 43 copies">
  144. ##ALT=<ID=CN44,Description="Copy number allele: 44 copies">
  145. ##ALT=<ID=CN45,Description="Copy number allele: 45 copies">
  146. ##ALT=<ID=CN46,Description="Copy number allele: 46 copies">
  147. ##ALT=<ID=CN47,Description="Copy number allele: 47 copies">
  148. ##ALT=<ID=CN48,Description="Copy number allele: 48 copies">
  149. ##ALT=<ID=CN49,Description="Copy number allele: 49 copies">
  150. ##ALT=<ID=CN50,Description="Copy number allele: 50 copies">
  151. ##ALT=<ID=CN51,Description="Copy number allele: 51 copies">
  152. ##ALT=<ID=CN52,Description="Copy number allele: 52 copies">
  153. ##ALT=<ID=CN53,Description="Copy number allele: 53 copies">
  154. ##ALT=<ID=CN54,Description="Copy number allele: 54 copies">
  155. ##ALT=<ID=CN55,Description="Copy number allele: 55 copies">
  156. ##ALT=<ID=CN56,Description="Copy number allele: 56 copies">
  157. ##ALT=<ID=CN57,Description="Copy number allele: 57 copies">
  158. ##ALT=<ID=CN58,Description="Copy number allele: 58 copies">
  159. ##ALT=<ID=CN59,Description="Copy number allele: 59 copies">
  160. ##ALT=<ID=CN60,Description="Copy number allele: 60 copies">
  161. ##ALT=<ID=CN61,Description="Copy number allele: 61 copies">
  162. ##ALT=<ID=CN62,Description="Copy number allele: 62 copies">
  163. ##ALT=<ID=CN63,Description="Copy number allele: 63 copies">
  164. ##ALT=<ID=CN64,Description="Copy number allele: 64 copies">
  165. ##ALT=<ID=CN65,Description="Copy number allele: 65 copies">
  166. ##ALT=<ID=CN66,Description="Copy number allele: 66 copies">
  167. ##ALT=<ID=CN67,Description="Copy number allele: 67 copies">
  168. ##ALT=<ID=CN68,Description="Copy number allele: 68 copies">
  169. ##ALT=<ID=CN69,Description="Copy number allele: 69 copies">
  170. ##ALT=<ID=CN70,Description="Copy number allele: 70 copies">
  171. ##ALT=<ID=CN71,Description="Copy number allele: 71 copies">
  172. ##ALT=<ID=CN72,Description="Copy number allele: 72 copies">
  173. ##ALT=<ID=CN73,Description="Copy number allele: 73 copies">
  174. ##ALT=<ID=CN74,Description="Copy number allele: 74 copies">
  175. ##ALT=<ID=CN75,Description="Copy number allele: 75 copies">
  176. ##ALT=<ID=CN76,Description="Copy number allele: 76 copies">
  177. ##ALT=<ID=CN77,Description="Copy number allele: 77 copies">
  178. ##ALT=<ID=CN78,Description="Copy number allele: 78 copies">
  179. ##ALT=<ID=CN79,Description="Copy number allele: 79 copies">
  180. ##ALT=<ID=CN80,Description="Copy number allele: 80 copies">
  181. ##ALT=<ID=CN81,Description="Copy number allele: 81 copies">
  182. ##ALT=<ID=CN82,Description="Copy number allele: 82 copies">
  183. ##ALT=<ID=CN83,Description="Copy number allele: 83 copies">
  184. ##ALT=<ID=CN84,Description="Copy number allele: 84 copies">
  185. ##ALT=<ID=CN85,Description="Copy number allele: 85 copies">
  186. ##ALT=<ID=CN86,Description="Copy number allele: 86 copies">
  187. ##ALT=<ID=CN87,Description="Copy number allele: 87 copies">
  188. ##ALT=<ID=CN88,Description="Copy number allele: 88 copies">
  189. ##ALT=<ID=CN89,Description="Copy number allele: 89 copies">
  190. ##ALT=<ID=CN90,Description="Copy number allele: 90 copies">
  191. ##ALT=<ID=CN91,Description="Copy number allele: 91 copies">
  192. ##ALT=<ID=CN92,Description="Copy number allele: 92 copies">
  193. ##ALT=<ID=CN93,Description="Copy number allele: 93 copies">
  194. ##ALT=<ID=CN94,Description="Copy number allele: 94 copies">
  195. ##ALT=<ID=CN95,Description="Copy number allele: 95 copies">
  196. ##ALT=<ID=CN96,Description="Copy number allele: 96 copies">
  197. ##ALT=<ID=CN97,Description="Copy number allele: 97 copies">
  198. ##ALT=<ID=CN98,Description="Copy number allele: 98 copies">
  199. ##ALT=<ID=CN99,Description="Copy number allele: 99 copies">
  200. ##ALT=<ID=CN100,Description="Copy number allele: 100 copies">
  201. ##ALT=<ID=CN101,Description="Copy number allele: 101 copies">
  202. ##ALT=<ID=CN102,Description="Copy number allele: 102 copies">
  203. ##ALT=<ID=CN103,Description="Copy number allele: 103 copies">
  204. ##ALT=<ID=CN104,Description="Copy number allele: 104 copies">
  205. ##ALT=<ID=CN105,Description="Copy number allele: 105 copies">
  206. ##ALT=<ID=CN106,Description="Copy number allele: 106 copies">
  207. ##ALT=<ID=CN107,Description="Copy number allele: 107 copies">
  208. ##ALT=<ID=CN108,Description="Copy number allele: 108 copies">
  209. ##ALT=<ID=CN109,Description="Copy number allele: 109 copies">
  210. ##ALT=<ID=CN110,Description="Copy number allele: 110 copies">
  211. ##ALT=<ID=CN111,Description="Copy number allele: 111 copies">
  212. ##ALT=<ID=CN112,Description="Copy number allele: 112 copies">
  213. ##ALT=<ID=CN113,Description="Copy number allele: 113 copies">
  214. ##ALT=<ID=CN114,Description="Copy number allele: 114 copies">
  215. ##ALT=<ID=CN115,Description="Copy number allele: 115 copies">
  216. ##ALT=<ID=CN116,Description="Copy number allele: 116 copies">
  217. ##ALT=<ID=CN117,Description="Copy number allele: 117 copies">
  218. ##ALT=<ID=CN118,Description="Copy number allele: 118 copies">
  219. ##ALT=<ID=CN119,Description="Copy number allele: 119 copies">
  220. ##ALT=<ID=CN120,Description="Copy number allele: 120 copies">
  221. ##ALT=<ID=CN121,Description="Copy number allele: 121 copies">
  222. ##ALT=<ID=CN122,Description="Copy number allele: 122 copies">
  223. ##ALT=<ID=CN123,Description="Copy number allele: 123 copies">
  224. ##ALT=<ID=CN124,Description="Copy number allele: 124 copies">
  225. ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
  226. ##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
  227. ##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
  228. ##INFO=<ID=CS,Number=1,Type=String,Description="Source call set.">
  229. ##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate of this variant">
  230. ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
  231. ##INFO=<ID=MC,Number=.,Type=String,Description="Merged calls.">
  232. ##INFO=<ID=MEINFO,Number=4,Type=String,Description="Mobile element info of the form NAME,START,END<POLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END">
  233. ##INFO=<ID=MEND,Number=1,Type=Integer,Description="Mitochondrial end coordinate of inserted sequence">
  234. ##INFO=<ID=MLEN,Number=1,Type=Integer,Description="Estimated length of mitochondrial insert">
  235. ##INFO=<ID=MSTART,Number=1,Type=Integer,Description="Mitochondrial start coordinate of inserted sequence">
  236. ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="SV length. It is only calculated for structural variation MEIs. For other types of SVs; one may calculate the SV length by INFO:END-START+1, or by finding the difference between lengthes of REF and ALT alleles">
  237. ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
  238. ##INFO=<ID=TSD,Number=1,Type=String,Description="Precise Target Site Duplication for bases, if unknown, value will be NULL">
  239. ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
  240. ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1)">
  241. ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
  242. ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
  243. ##INFO=<ID=EAS_AF,Number=A,Type=Float,Description="Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)">
  244. ##INFO=<ID=EUR_AF,Number=A,Type=Float,Description="Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)">
  245. ##INFO=<ID=AFR_AF,Number=A,Type=Float,Description="Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)">
  246. ##INFO=<ID=AMR_AF,Number=A,Type=Float,Description="Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)">
  247. ##INFO=<ID=SAS_AF,Number=A,Type=Float,Description="Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)">
  248. ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth; only low coverage data were counted towards the DP, exome data were not used">
  249. ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele. Format: AA|REF|ALT|IndelType. AA: Ancestral allele, REF:Reference Allele, ALT:Alternate Allele, IndelType:Type of Indel (REF, ALT and IndelType are only defined for indels)">
  250. ##INFO=<ID=VT,Number=.,Type=String,Description="indicates what type of variant the line represents">
  251. ##INFO=<ID=EX_TARGET,Number=0,Type=Flag,Description="indicates whether a variant is within the exon pull down target boundaries">
  252. ##INFO=<ID=MULTI_ALLELIC,Number=0,Type=Flag,Description="indicates whether a site is multi-allelic">
  253. ##source_20160511.1=vcf-subset(r940) -f -c HG03476 /net/isilonP/public/rw/ensembl/1000genomes/release-17/tmp/slicer/8.128746681-128747681.ALL.chr8.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz
  254. #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG03476
  255. 8 128746780 rs4645941 C T 100 PASS AA=C|||;AC=0;AF=0.00419329;AFR_AF=0.0136;AMR_AF=0.0029;AN=2;DP=15453;EAS_AF=0;EUR_AF=0.001;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  256. 8 128746830 rs552488552 C A 100 PASS AA=C|||;AC=0;AF=0.000199681;AFR_AF=0.0008;AMR_AF=0;AN=2;DP=15536;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  257. 8 128746838 rs185630499 G T 100 PASS AA=G|||;AC=0;AF=0.000199681;AFR_AF=0;AMR_AF=0.0014;AN=2;DP=15484;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  258. 8 128747008 rs531866982 C A 100 PASS AA=C|||;AC=0;AF=0.000199681;AFR_AF=0;AMR_AF=0;AN=2;DP=9875;EAS_AF=0.001;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  259. 8 128747011 rs117748025 C A 100 PASS AA=C|||;AC=0;AF=0.0427316;AFR_AF=0.0091;AMR_AF=0.0807;AN=2;DP=11238;EAS_AF=0;EUR_AF=0.1193;NS=2504;SAS_AF=0.0266;VT=SNP GT 0|0
  260. 8 128747012 rs28461617 C A 100 PASS AA=c|||;AC=0;AF=0.0523163;AFR_AF=0.1846;AMR_AF=0.0144;AN=2;DP=11197;EAS_AF=0.001;EUR_AF=0.003;NS=2504;SAS_AF=0.0041;VT=SNP GT 0|0
  261. 8 128747017 rs535867931 A G 100 PASS AA=A|||;AC=0;AF=0.00459265;AFR_AF=0.0174;AMR_AF=0;AN=2;DP=11101;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  262. 8 128747117 rs147436834 G A 100 PASS AA=G|||;AC=0;AF=0.0071885;AFR_AF=0.0265;AMR_AF=0.0014;AN=2;DP=13172;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  263. 8 128747118 rs180769192 G A 100 PASS AA=G|||;AC=0;AF=0.000199681;AFR_AF=0;AMR_AF=0;AN=2;DP=13100;EAS_AF=0;EUR_AF=0.001;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  264. 8 128747164 rs552828696 G GT 100 PASS AA=TTTTTTT|TTTTTTT|TTTTTTTT|insertion;AC=0;AF=0.000798722;AFR_AF=0.003;AMR_AF=0;AN=2;DP=12399;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=INDEL GT 0|0
  265. 8 128747196 rs186019633 C G 100 PASS AA=C|||;AC=0;AF=0.000399361;AFR_AF=0.0008;AMR_AF=0.0014;AN=2;DP=12111;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  266. 8 128747257 rs4645942 AC A 100 PASS AA=CCCCC|CCCCC|CCCC|deletion;AC=0;AF=0.00359425;AFR_AF=0.0136;AMR_AF=0;AN=2;DP=11878;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=INDEL GT 0|0
  267. 8 128747311 rs558420167 C G 100 PASS AA=C|||;AC=0;AF=0.000998403;AFR_AF=0.0038;AMR_AF=0;AN=2;DP=12282;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  268. 8 128747371 rs148051381 G A 100 PASS AA=G|||;AC=0;AF=0.00179712;AFR_AF=0.0053;AMR_AF=0.0014;AN=2;DP=12004;EAS_AF=0;EUR_AF=0.001;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  269. 8 128747411 rs3808379 T C 100 PASS AA=C|||;AC=0;AF=0.0816693;AFR_AF=0.1921;AMR_AF=0.0173;AN=2;DP=11597;EAS_AF=0.0714;EUR_AF=0.0258;NS=2504;SAS_AF=0.046;VT=SNP GT 0|0
  270. 8 128747471 rs4645943 C T 100 PASS AA=T|||;AC=1;AF=0.21226;AFR_AF=0.3737;AMR_AF=0.0951;AN=2;DP=12206;EAS_AF=0.2688;EUR_AF=0.0517;NS=2504;SAS_AF=0.184;VT=SNP GT 1|0
  271. 8 128747555 rs141631033 C T 100 PASS AA=C|||;AC=0;AF=0.00279553;AFR_AF=0.0091;AMR_AF=0.0029;AN=2;DP=14061;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
  272. 8 128747619 rs542231563 C T 100 PASS AA=C|||;AC=0;AF=0.000399361;AFR_AF=0.0008;AMR_AF=0.0014;AN=2;DP=16097;EAS_AF=0;EUR_AF=0;NS=2504;SAS_AF=0;VT=SNP GT 0|0
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!