[23/Aug/2016 17:21:20 luigi-interface] ERROR: [pid 32209] Worker Worker(salt=709439387, workers=8, host=Alexanders-MacBook-Pro.local, username=alexrson, pid=30749) failed    AlignReads(batch_id=pipeline_test_1471997846_82875, input_batch_id=pipeline_test, sample_id=sample_cnv)
Traceback (most recent call last):
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/luigi/worker.py", line 162, in run
    new_deps = self._run_get_new_deps()
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/luigi/worker.py", line 113, in _run_get_new_deps
    task_gen = self.task.run()
  File "/Users/alexrson/code/color/src/infra/pipeline/timer.py", line 21, in wrapper
    result = function(*args, **kwargs)
  File "/Users/alexrson/code/color/src/infra/pipeline/dependencies.py", line 162, in run
    input_batch_id=self.input_batch_id)
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/celery/app/task.py", line 453, in delay
    return self.apply_async(args, kwargs)
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/celery/app/task.py", line 547, in apply_async
    link=link, link_error=link_error, **options)
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/celery/app/task.py", line 739, in apply
    request=request, propagate=throw)
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/celery/app/trace.py", line 355, in eager_trace_task
    uuid, args, kwargs, request)
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/celery/app/trace.py", line 253, in trace_task
    I, R, state, retval = on_error(task_request, exc, uuid)
  File "/Users/alexrson/code/color/local/virtualenv/lib/python2.7/site-packages/celery/app/trace.py", line 240, in trace_task
    R = retval = fun(*args, **kwargs)
  File "/Users/alexrson/code/color/src/infra/pipeline/tasks.py", line 196, in align_reads
    variant_calling.bwa_align(batch_id, sample_id)
  File "/Users/alexrson/code/color/src/infra/pipeline/timer.py", line 21, in wrapper
    result = function(*args, **kwargs)
  File "/Users/alexrson/code/color/src/infra/pipeline/variant_calling.py", line 169, in bwa_align
    batch_id, sample_id, "%(bwa_script)s %(bwa_location)s %(genome_fasta)s %(forward)s %(reverse)s %(bam_destination_path)s" % locals()
  File "/Users/alexrson/code/color/src/infra/pipeline/pipeline_util.py", line 238, in run_command
    " '%(batch_id)s/%(sample_id)s'. stderr follows: %(stderr)s") % locals())
RuntimeError: [Alexanders-MacBook-Pro.local] Error with `/Users/alexrson/code/color/src/bin/bwa.sh /Users/alexrson/code/color/local/bwa/bwa.Darwin /Users/alexrson/code/color/src/datasets/etc/pipeline_test/resources/b37/GRCh37.p12.p_12_15.fa fwd.fastq rev.fastq /var/folders/hr/2_9m3l7n5lb1w1l4spmvtn3r0000gn/T/0e0963c8-adce-4b92-b425-e89f64e35f5f_N9Us0U/pipeline_test_1471997846_82875/sample_cnv/pre_md` on 'pipeline_test_1471997846_82875/sample_cnv'. stderr follows: mktemp: illegal option -- -
usage: mktemp [-d] [-q] [-t prefix] [-u] template ...
       mktemp [-d] [-q] [-u] -t prefix