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  1. #NEXUS
  2.  
  3. BEGIN TAXA;
  4. TITLE example nexus file;
  5. DIMENSIONS NTAX=262;
  6. TAXLABELS
  7. hek02580_sample_8_100
  8. hek02635_sample_8_100
  9. hek02724_sample_8_100
  10. hek02978_sample_8_100
  11. hek02714_sample_8_100
  12. hek02887_sample_8_100
  13. hek02587_sample_8_100
  14. hek02588_sample_8_100
  15. M22_sample_8_100
  16. DBVPG1373_sample_8_100
  17. mjj975_sample_8_100
  18. mjj978_sample_8_100
  19. mjj981_sample_8_100
  20. asc215_sample_8_100
  21. L1374_sample_8_100
  22. L1528_sample_8_100
  23. DBVPG1106_sample_8_100
  24. DBVPG1788_sample_8_100
  25. DBVPG6765_sample_8_100
  26. cer_Y1532_sample_8_100
  27. TOT_sample_8_100
  28. hek01639_sample_8_100
  29. WE372_sample_8_100
  30. sacchy1_sample_8_100
  31. sacchy_15_sample_8_100
  32. hek01876_sample_8_100
  33. RM111a_sample_8_100
  34. hek02583_sample_8_100
  35. BC187_UCD2120_sample_8_086
  36. hek00221_sample_8_100
  37. hek00290_sample_8_099
  38. hek01958_sample_8_100
  39. kal_1_sample_8_100
  40. kal_2_sample_8_100
  41. kal_K3_sample_8_100
  42. kal_4_sample_8_100
  43. kal__1_sample_8_100
  44. kal__2_sample_8_100
  45. Y12657_sample_8_100
  46. cer_Y17449_sample_8_100
  47. kal__3_sample_8_100
  48. kal__4_sample_8_100
  49. sacchy_131_sample_8_067
  50. sacchy_132_sample_8_072
  51. ark_1_sample_9_055
  52. ark_2_sample_9_054
  53. sacchy_4_sample_8_073
  54. hek02575_sample_8_076
  55. hek02884_sample_8_086
  56. hek02809_sample_8_081
  57. sacchy_14_sample_8_072
  58. sacchy_171_sample_9_054
  59. sacchy_172_sample_9_054
  60. hek00415_sample_8_082
  61. BC_2_sample_9_099
  62. BC_1_sample_9_099
  63. sacchy_5_sample_9_099
  64. sacchy_16_sample_9_099
  65. sacchy_9_sample_9_100
  66. sacchy_111_sample_9_100
  67. sacchy_112_sample_9_100
  68. sacchy_2_sample_9_100
  69. sacchy_31_sample_9_100
  70. sacchy_32_sample_9_100
  71. sacchy_71_sample_9_100
  72. sacchy_72_sample_9_100
  73. Y502_sample_8_068
  74. I14_sample_8_069
  75. DCM6_sample_8_056
  76. DCM21_sample_8_056
  77. Y963_sample_1_052
  78. LAS_AL_sample_5_085
  79. BF_5_sample_8_056
  80. UCD_05780_sample_8_049
  81. BF_2_sample_8_056
  82. OB1_5D_sample_8_056
  83. OB4_8B_sample_8_055
  84. YIIC17E5g_sample_8_060
  85. BF_7_sample_8_059
  86. BF_8_sample_8_060
  87. BF_6_sample_8_057
  88. BF_9_sample_8_049
  89. TY08_sample_8_060
  90. YB191A_sample_8_046
  91. DBVPG1853_sample_8_053
  92. cer_Y1547_sample_8_070
  93. Y1545_sample_8_065
  94. Y2222_sample_8_054
  95. mjj653_sample_5_085
  96. FL100_sample_5_099
  97. T73r_sample_5_085
  98. Sigma1278b_sample_5_050
  99. W303_sample_5_100
  100. NCYC361r_sample_5_100
  101. 322134Sr_sample_5_100
  102. CBS7960_sample_5_050
  103. T73g_sample_5_051
  104. YIIC17E5r_sample_5_100
  105. K11r_sample_5_100
  106. mjj280_sample_5_100
  107. asc324g_sample_5_099
  108. asc324r_sample_5_100
  109. YAD145_FY4_sample_5_100
  110. S288C_sample_5_100
  111. 322134Sg_sample_8_054
  112. mj63_sample_8_046
  113. mj14_sample_7_100
  114. mj14p_sample_7_100
  115. mj34_sample_7_100
  116. mj13_sample_7_100
  117. mj60_sample_7_100
  118. mj33_sample_7_100
  119. mj35_sample_7_100
  120. 273614N_sample_8_045
  121. NCYC361g_sample_8_044
  122. Y636_sample_4_055
  123. asc382r_sample_8_055
  124. asc382g_sample_8_056
  125. YS2_sample_4_094
  126. YS4_sample_4_099
  127. Y7177_sample_4_094
  128. Y12632_sample_4_048
  129. Y6341_sample_4_096
  130. UCD_854_sample_4_064
  131. Y2183_sample_4_097
  132. YS9_sample_4_080
  133. YB432_sample_4_099
  134. CBS7764_sample_4_097
  135. mj3_sample_4_100
  136. mj23_sample_4_100
  137. mj5_sample_4_100
  138. YB515_sample_4_091
  139. Y5510_sample_4_100
  140. Y2184_sample_4_100
  141. IL01_sample_6_050
  142. YB908_sample_6_051
  143. Y11878_sample_6_039
  144. G86_sample_6_054
  145. G89_sample_6_051
  146. yar529515_sample_6_061
  147. yar529516_sample_6_065
  148. yar529518_sample_6_071
  149. yar529517_sample_6_068
  150. G205_sample_6_066
  151. YB594_sample_8_050
  152. YB596_sample_3_052
  153. Y6277_sample_8_046
  154. mjj320_sample_8_047
  155. mjj326_sample_8_040
  156. mjj421g_sample_8_040
  157. mjj428_sample_7_027
  158. Y27788_sample_8_035
  159. YB427_sample_8_028
  160. DBVPG6040_sample_3_033
  161. 378604X_sample_3_026
  162. mjj421r_sample_5_042
  163. YB1952_sample_8_024
  164. Y1778_sample_8_023
  165. mj58_sample_3_045
  166. mj59_sample_3_045
  167. mj57_sample_3_046
  168. mj36_sample_3_045
  169. mjj436_to_mjj451_sample_6_032
  170. Y10988_sample_3_041
  171. cer_YB210_sample_3_024
  172. LAS_PA_sample_6_052
  173. DBVPG6044_sample_6_100
  174. NCYC110_sample_6_097
  175. PW5_sample_6_100
  176. SK1_sample_6_084
  177. Y55_sample_6_075
  178. YB4085r1_sample_6_064
  179. YB4085r2_sample_6_065
  180. YB4081_sample_6_059
  181. Y1438_sample_6_063
  182. mjj269_sample_6_074
  183. Y10_cer_y7567_sample_6_074
  184. UWOPS872421r1_sample_6_075
  185. UWOPS052173_sample_6_099
  186. UWOPS052272_sample_6_099
  187. UWOPS034614_sample_6_099
  188. YB4506_sample_6_092
  189. UWOPS837873g_sample_6_066
  190. YPS1009_sample_2_100
  191. CP1_sample_2_100
  192. NC02_sample_2_100
  193. Y12603_sample_2_100
  194. TN1TN5C_sample_2_100
  195. hek01146_sample_2_100
  196. hek00411_sample_2_100
  197. hek02595_sample_2_100
  198. BF_3_sample_2_071
  199. IN1_sample_2_053
  200. YPS163_sample_2_100
  201. YPS128_sample_2_100
  202. UWOPS872421r2_sample_2_100
  203. LASPR_sample_2_100
  204. BC186_YPS606_sample_2_100
  205. YPS606_sample_2_100
  206. hek01135_sample_6_036
  207. hek00088_sample_6_052
  208. UCD_61190_sample_6_051
  209. UWOPS837873r_sample_1_066
  210. DY8_sample_1_080
  211. hek03066_sample_1_055
  212. T7_sample_1_100
  213. BW1BW12_sample_1_100
  214. IY36_sample_1_100
  215. IY41_sample_1_100
  216. hek03027_sample_1_100
  217. hek00400_sample_1_100
  218. hek00673_sample_1_100
  219. hek00729_sample_1_100
  220. hek01267_sample_1_100
  221. hek01422_sample_1_100
  222. hek01172_sample_1_100
  223. hek01205_sample_1_100
  224. hek00463_sample_1_100
  225. hek02773_sample_1_100
  226. hek02926_sample_1_100
  227. hek02707_sample_1_100
  228. hek02509_sample_1_100
  229. hek02518_sample_1_100
  230. hek02503_sample_1_100
  231. hek00497_sample_1_100
  232. hek02441_sample_1_100
  233. hek00012_sample_1_100
  234. hek01027_sample_1_100
  235. hek02439_sample_1_100
  236. Y389_sample_4_028
  237. TY12_sample_3_040
  238. TY19_sample_3_040
  239. YB3224_sample_3_044
  240. Y393HENRICI_31_sample_4_052
  241. Y1649_sample_4_063
  242. Y2190_sample_4_063
  243. Y383Henrici_3_sample_4_063
  244. UCD_4014_sample_4_058
  245. Y2253_sample_3_066
  246. K11g_sample_3_100
  247. cer_Y12617_sample_3_087
  248. cer_Y12717_sample_3_089
  249. Y999_sample_3_087
  250. Y7563_sample_3_086
  251. BF_4_sample_3_091
  252. cer_Y7662_sample_3_099
  253. Y12844_sample_3_100
  254. UCD_852_sample_3_100
  255. Y11574_sample_3_100
  256. UC5_UCD612_sample_3_100
  257. cer_YB1779_sample_3_100
  258. UCD_7915_sample_3_100
  259. UCD_629_sample_3_100
  260. cer_YB1013_sample_3_100
  261. Y1791_sample_3_100
  262. Y12679_sample_3_100
  263. Y9r_sample_3_100
  264. Y9g_sample_3_100
  265. Y12_cer_y12633_sample_3_100
  266. cer_Y12769_sample_3_100
  267. cer_Y12658_sample_3_100
  268. Y17447_sample_3_100
  269. ;END;
  270.  
  271.  
  272. BEGIN CHARACTERS;
  273. TITLE Character_Matrix;
  274. DIMENSIONS NCHAR=1;
  275. FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 ";
  276. MATRIX
  277. hek02580_sample_8_100 1
  278. hek02635_sample_8_100 0
  279. hek02724_sample_8_100 1
  280. hek02978_sample_8_100 0
  281. hek02714_sample_8_100 1
  282. hek02887_sample_8_100 1
  283. hek02587_sample_8_100 1
  284. hek02588_sample_8_100 1
  285. M22_sample_8_100 1
  286. DBVPG1373_sample_8_100 0
  287. mjj975_sample_8_100 1
  288. mjj978_sample_8_100 1
  289. mjj981_sample_8_100 1
  290. asc215_sample_8_100 1
  291. L1374_sample_8_100 1
  292. L1528_sample_8_100 1
  293. DBVPG1106_sample_8_100 1
  294. DBVPG1788_sample_8_100 0
  295. DBVPG6765_sample_8_100 0
  296. cer_Y1532_sample_8_100 0
  297. TOT_sample_8_100 1
  298. hek01639_sample_8_100 0
  299. WE372_sample_8_100 1
  300. sacchy1_sample_8_100 0
  301. sacchy_15_sample_8_100 0
  302. hek01876_sample_8_100 0
  303. RM111a_sample_8_100 1
  304. hek02583_sample_8_100 1
  305. BC187_UCD2120_sample_8_086 1
  306. hek00221_sample_8_100 0
  307. hek00290_sample_8_099 1
  308. hek01958_sample_8_100 0
  309. kal_1_sample_8_100 1
  310. kal_2_sample_8_100 1
  311. kal_K3_sample_8_100 1
  312. kal_4_sample_8_100 1
  313. kal__1_sample_8_100 1
  314. kal__2_sample_8_100 1
  315. Y12657_sample_8_100 1
  316. cer_Y17449_sample_8_100 0
  317. kal__3_sample_8_100 1
  318. kal__4_sample_8_100 1
  319. sacchy_131_sample_8_067 0
  320. sacchy_132_sample_8_072 0
  321. ark_1_sample_9_055 0
  322. ark_2_sample_9_054 0
  323. sacchy_4_sample_8_073 0
  324. hek02575_sample_8_076 0
  325. hek02884_sample_8_086 1
  326. hek02809_sample_8_081 1
  327. sacchy_14_sample_8_072 0
  328. sacchy_171_sample_9_054 0
  329. sacchy_172_sample_9_054 0
  330. hek00415_sample_8_082 1
  331. BC_2_sample_9_099 0
  332. BC_1_sample_9_099 0
  333. sacchy_5_sample_9_099 0
  334. sacchy_16_sample_9_099 0
  335. sacchy_9_sample_9_100 0
  336. sacchy_111_sample_9_100 0
  337. sacchy_112_sample_9_100 0
  338. sacchy_2_sample_9_100 0
  339. sacchy_31_sample_9_100 0
  340. sacchy_32_sample_9_100 0
  341. sacchy_71_sample_9_100 0
  342. sacchy_72_sample_9_100 0
  343. Y502_sample_8_068 0
  344. I14_sample_8_069 1
  345. DCM6_sample_8_056 0
  346. DCM21_sample_8_056 0
  347. Y963_sample_1_052 0
  348. LAS_AL_sample_5_085 1
  349. BF_5_sample_8_056 0
  350. UCD_05780_sample_8_049 0
  351. BF_2_sample_8_056 0
  352. OB1_5D_sample_8_056 1
  353. OB4_8B_sample_8_055 1
  354. YIIC17E5g_sample_8_060 1
  355. BF_7_sample_8_059 0
  356. BF_8_sample_8_060 0
  357. BF_6_sample_8_057 0
  358. BF_9_sample_8_049 0
  359. TY08_sample_8_060 1
  360. YB191A_sample_8_046 1
  361. DBVPG1853_sample_8_053 1
  362. cer_Y1547_sample_8_070 1
  363. Y1545_sample_8_065 1
  364. Y2222_sample_8_054 1
  365. mjj653_sample_5_085 1
  366. FL100_sample_5_099 1
  367. T73r_sample_5_085 1
  368. Sigma1278b_sample_5_050 1
  369. W303_sample_5_100 1
  370. NCYC361r_sample_5_100 1
  371. 322134Sr_sample_5_100 0
  372. CBS7960_sample_5_050 1
  373. T73g_sample_5_051 1
  374. YIIC17E5r_sample_5_100 1
  375. K11r_sample_5_100 1
  376. mjj280_sample_5_100 1
  377. asc324g_sample_5_099 1
  378. asc324r_sample_5_100 1
  379. YAD145_FY4_sample_5_100 1
  380. S288C_sample_5_100 1
  381. 322134Sg_sample_8_054 0
  382. mj63_sample_8_046 0
  383. mj14_sample_7_100 0
  384. mj14p_sample_7_100 0
  385. mj34_sample_7_100 0
  386. mj13_sample_7_100 0
  387. mj60_sample_7_100 0
  388. mj33_sample_7_100 0
  389. mj35_sample_7_100 0
  390. 273614N_sample_8_045 0
  391. NCYC361g_sample_8_044 1
  392. Y636_sample_4_055 1
  393. asc382r_sample_8_055 1
  394. asc382g_sample_8_056 1
  395. YS2_sample_4_094 1
  396. YS4_sample_4_099 1
  397. Y7177_sample_4_094 1
  398. Y12632_sample_4_048 1
  399. Y6341_sample_4_096 0
  400. UCD_854_sample_4_064 1
  401. Y2183_sample_4_097 0
  402. YS9_sample_4_080 1
  403. YB432_sample_4_099 0
  404. CBS7764_sample_4_097 0
  405. mj3_sample_4_100 0
  406. mj23_sample_4_100 0
  407. mj5_sample_4_100 0
  408. YB515_sample_4_091 1
  409. Y5510_sample_4_100 0
  410. Y2184_sample_4_100 0
  411. IL01_sample_6_050 0
  412. YB908_sample_6_051 0
  413. Y11878_sample_6_039 1
  414. G86_sample_6_054 1
  415. G89_sample_6_051 1
  416. yar529515_sample_6_061 1
  417. yar529516_sample_6_065 1
  418. yar529518_sample_6_071 1
  419. yar529517_sample_6_068 1
  420. G205_sample_6_066 1
  421. YB594_sample_8_050 0
  422. YB596_sample_3_052 0
  423. Y6277_sample_8_046 1
  424. mjj320_sample_8_047 1
  425. mjj326_sample_8_040 1
  426. mjj421g_sample_8_040 1
  427. mjj428_sample_7_027 1
  428. Y27788_sample_8_035 0
  429. YB427_sample_8_028 1
  430. DBVPG6040_sample_3_033 1
  431. 378604X_sample_3_026 0
  432. mjj421r_sample_5_042 1
  433. YB1952_sample_8_024 0
  434. Y1778_sample_8_023 1
  435. mj58_sample_3_045 0
  436. mj59_sample_3_045 0
  437. mj57_sample_3_046 0
  438. mj36_sample_3_045 0
  439. mjj436_to_mjj451_sample_6_032 1
  440. Y10988_sample_3_041 1
  441. cer_YB210_sample_3_024 0
  442. LAS_PA_sample_6_052 0
  443. DBVPG6044_sample_6_100 1
  444. NCYC110_sample_6_097 1
  445. PW5_sample_6_100 1
  446. SK1_sample_6_084 0
  447. Y55_sample_6_075 1
  448. YB4085r1_sample_6_064 0
  449. YB4085r2_sample_6_065 0
  450. YB4081_sample_6_059 0
  451. Y1438_sample_6_063 1
  452. mjj269_sample_6_074 1
  453. Y10_cer_y7567_sample_6_074 0
  454. UWOPS872421r1_sample_6_075 0
  455. UWOPS052173_sample_6_099 0
  456. UWOPS052272_sample_6_099 0
  457. UWOPS034614_sample_6_099 0
  458. YB4506_sample_6_092 0
  459. UWOPS837873g_sample_6_066 0
  460. YPS1009_sample_2_100 0
  461. CP1_sample_2_100 0
  462. NC02_sample_2_100 0
  463. Y12603_sample_2_100 1
  464. TN1TN5C_sample_2_100 0
  465. hek01146_sample_2_100 0
  466. hek00411_sample_2_100 1
  467. hek02595_sample_2_100 1
  468. BF_3_sample_2_071 0
  469. IN1_sample_2_053 0
  470. YPS163_sample_2_100 0
  471. YPS128_sample_2_100 0
  472. UWOPS872421r2_sample_2_100 0
  473. LASPR_sample_2_100 0
  474. BC186_YPS606_sample_2_100 0
  475. YPS606_sample_2_100 0
  476. hek01135_sample_6_036 0
  477. hek00088_sample_6_052 0
  478. UCD_61190_sample_6_051 1
  479. UWOPS837873r_sample_1_066 0
  480. DY8_sample_1_080 0
  481. hek03066_sample_1_055 0
  482. T7_sample_1_100 0
  483. BW1BW12_sample_1_100 0
  484. IY36_sample_1_100 0
  485. IY41_sample_1_100 0
  486. hek03027_sample_1_100 0
  487. hek00400_sample_1_100 1
  488. hek00673_sample_1_100 1
  489. hek00729_sample_1_100 1
  490. hek01267_sample_1_100 0
  491. hek01422_sample_1_100 0
  492. hek01172_sample_1_100 0
  493. hek01205_sample_1_100 0
  494. hek00463_sample_1_100 0
  495. hek02773_sample_1_100 1
  496. hek02926_sample_1_100 1
  497. hek02707_sample_1_100 1
  498. hek02509_sample_1_100 0
  499. hek02518_sample_1_100 0
  500. hek02503_sample_1_100 0
  501. hek00497_sample_1_100 0
  502. hek02441_sample_1_100 0
  503. hek00012_sample_1_100 0
  504. hek01027_sample_1_100 0
  505. hek02439_sample_1_100 0
  506. Y389_sample_4_028 0
  507. TY12_sample_3_040 1
  508. TY19_sample_3_040 1
  509. YB3224_sample_3_044 1
  510. Y393HENRICI_31_sample_4_052 0
  511. Y1649_sample_4_063 0
  512. Y2190_sample_4_063 0
  513. Y383Henrici_3_sample_4_063 1
  514. UCD_4014_sample_4_058 0
  515. Y2253_sample_3_066 1
  516. K11g_sample_3_100 1
  517. cer_Y12617_sample_3_087 1
  518. cer_Y12717_sample_3_089 1
  519. Y999_sample_3_087 1
  520. Y7563_sample_3_086 1
  521. BF_4_sample_3_091 0
  522. cer_Y7662_sample_3_099 1
  523. Y12844_sample_3_100 1
  524. UCD_852_sample_3_100 1
  525. Y11574_sample_3_100 1
  526. UC5_UCD612_sample_3_100 1
  527. cer_YB1779_sample_3_100 1
  528. UCD_7915_sample_3_100 1
  529. UCD_629_sample_3_100 1
  530. cer_YB1013_sample_3_100 1
  531. Y1791_sample_3_100 1
  532. Y12679_sample_3_100 1
  533. Y9r_sample_3_100 1
  534. Y9g_sample_3_100 1
  535. Y12_cer_y12633_sample_3_100 1
  536. cer_Y12769_sample_3_100 1
  537. cer_Y12658_sample_3_100 0
  538. Y17447_sample_3_100 0
  539. ;END;
  540.  
  541.  
  542. #NEXUS
  543. Begin taxa;
  544. Dimensions ntax=262;
  545. Taxlabels
  546. hek02580_sample_8_100
  547. hek02635_sample_8_100
  548. hek02724_sample_8_100
  549. hek02978_sample_8_100
  550. hek02714_sample_8_100
  551. hek02887_sample_8_100
  552. hek02587_sample_8_100
  553. hek02588_sample_8_100
  554. M22_sample_8_100
  555. DBVPG1373_sample_8_100
  556. mjj975_sample_8_100
  557. mjj978_sample_8_100
  558. mjj981_sample_8_100
  559. asc215_sample_8_100
  560. L1374_sample_8_100
  561. L1528_sample_8_100
  562. DBVPG1106_sample_8_100
  563. DBVPG1788_sample_8_100
  564. DBVPG6765_sample_8_100
  565. cer_Y1532_sample_8_100
  566. TOT_sample_8_100
  567. hek01639_sample_8_100
  568. WE372_sample_8_100
  569. sacchy1_sample_8_100
  570. sacchy_15_sample_8_100
  571. hek01876_sample_8_100
  572. RM111a_sample_8_100
  573. hek02583_sample_8_100
  574. BC187_UCD2120_sample_8_086
  575. hek00221_sample_8_100
  576. hek00290_sample_8_099
  577. hek01958_sample_8_100
  578. kal_1_sample_8_100
  579. kal_2_sample_8_100
  580. kal_K3_sample_8_100
  581. kal_4_sample_8_100
  582. kal__1_sample_8_100
  583. kal__2_sample_8_100
  584. Y12657_sample_8_100
  585. cer_Y17449_sample_8_100
  586. kal__3_sample_8_100
  587. kal__4_sample_8_100
  588. sacchy_131_sample_8_067
  589. sacchy_132_sample_8_072
  590. ark_1_sample_9_055
  591. ark_2_sample_9_054
  592. sacchy_4_sample_8_073
  593. hek02575_sample_8_076
  594. hek02884_sample_8_086
  595. hek02809_sample_8_081
  596. sacchy_14_sample_8_072
  597. sacchy_171_sample_9_054
  598. sacchy_172_sample_9_054
  599. hek00415_sample_8_082
  600. BC_2_sample_9_099
  601. BC_1_sample_9_099
  602. sacchy_5_sample_9_099
  603. sacchy_16_sample_9_099
  604. sacchy_9_sample_9_100
  605. sacchy_111_sample_9_100
  606. sacchy_112_sample_9_100
  607. sacchy_2_sample_9_100
  608. sacchy_31_sample_9_100
  609. sacchy_32_sample_9_100
  610. sacchy_71_sample_9_100
  611. sacchy_72_sample_9_100
  612. Y502_sample_8_068
  613. I14_sample_8_069
  614. DCM6_sample_8_056
  615. DCM21_sample_8_056
  616. Y963_sample_1_052
  617. LAS_AL_sample_5_085
  618. BF_5_sample_8_056
  619. UCD_05780_sample_8_049
  620. BF_2_sample_8_056
  621. OB1_5D_sample_8_056
  622. OB4_8B_sample_8_055
  623. YIIC17E5g_sample_8_060
  624. BF_7_sample_8_059
  625. BF_8_sample_8_060
  626. BF_6_sample_8_057
  627. BF_9_sample_8_049
  628. TY08_sample_8_060
  629. YB191A_sample_8_046
  630. DBVPG1853_sample_8_053
  631. cer_Y1547_sample_8_070
  632. Y1545_sample_8_065
  633. Y2222_sample_8_054
  634. mjj653_sample_5_085
  635. FL100_sample_5_099
  636. T73r_sample_5_085
  637. Sigma1278b_sample_5_050
  638. W303_sample_5_100
  639. NCYC361r_sample_5_100
  640. 322134Sr_sample_5_100
  641. CBS7960_sample_5_050
  642. T73g_sample_5_051
  643. YIIC17E5r_sample_5_100
  644. K11r_sample_5_100
  645. mjj280_sample_5_100
  646. asc324g_sample_5_099
  647. asc324r_sample_5_100
  648. YAD145_FY4_sample_5_100
  649. S288C_sample_5_100
  650. 322134Sg_sample_8_054
  651. mj63_sample_8_046
  652. mj14_sample_7_100
  653. mj14p_sample_7_100
  654. mj34_sample_7_100
  655. mj13_sample_7_100
  656. mj60_sample_7_100
  657. mj33_sample_7_100
  658. mj35_sample_7_100
  659. 273614N_sample_8_045
  660. NCYC361g_sample_8_044
  661. Y636_sample_4_055
  662. asc382r_sample_8_055
  663. asc382g_sample_8_056
  664. YS2_sample_4_094
  665. YS4_sample_4_099
  666. Y7177_sample_4_094
  667. Y12632_sample_4_048
  668. Y6341_sample_4_096
  669. UCD_854_sample_4_064
  670. Y2183_sample_4_097
  671. YS9_sample_4_080
  672. YB432_sample_4_099
  673. CBS7764_sample_4_097
  674. mj3_sample_4_100
  675. mj23_sample_4_100
  676. mj5_sample_4_100
  677. YB515_sample_4_091
  678. Y5510_sample_4_100
  679. Y2184_sample_4_100
  680. IL01_sample_6_050
  681. YB908_sample_6_051
  682. Y11878_sample_6_039
  683. G86_sample_6_054
  684. G89_sample_6_051
  685. yar529515_sample_6_061
  686. yar529516_sample_6_065
  687. yar529518_sample_6_071
  688. yar529517_sample_6_068
  689. G205_sample_6_066
  690. YB594_sample_8_050
  691. YB596_sample_3_052
  692. Y6277_sample_8_046
  693. mjj320_sample_8_047
  694. mjj326_sample_8_040
  695. mjj421g_sample_8_040
  696. mjj428_sample_7_027
  697. Y27788_sample_8_035
  698. YB427_sample_8_028
  699. DBVPG6040_sample_3_033
  700. 378604X_sample_3_026
  701. mjj421r_sample_5_042
  702. YB1952_sample_8_024
  703. Y1778_sample_8_023
  704. mj58_sample_3_045
  705. mj59_sample_3_045
  706. mj57_sample_3_046
  707. mj36_sample_3_045
  708. mjj436_to_mjj451_sample_6_032
  709. Y10988_sample_3_041
  710. cer_YB210_sample_3_024
  711. LAS_PA_sample_6_052
  712. DBVPG6044_sample_6_100
  713. NCYC110_sample_6_097
  714. PW5_sample_6_100
  715. SK1_sample_6_084
  716. Y55_sample_6_075
  717. YB4085r1_sample_6_064
  718. YB4085r2_sample_6_065
  719. YB4081_sample_6_059
  720. Y1438_sample_6_063
  721. mjj269_sample_6_074
  722. Y10_cer_y7567_sample_6_074
  723. UWOPS872421r1_sample_6_075
  724. UWOPS052173_sample_6_099
  725. UWOPS052272_sample_6_099
  726. UWOPS034614_sample_6_099
  727. YB4506_sample_6_092
  728. UWOPS837873g_sample_6_066
  729. YPS1009_sample_2_100
  730. CP1_sample_2_100
  731. NC02_sample_2_100
  732. Y12603_sample_2_100
  733. TN1TN5C_sample_2_100
  734. hek01146_sample_2_100
  735. hek00411_sample_2_100
  736. hek02595_sample_2_100
  737. BF_3_sample_2_071
  738. IN1_sample_2_053
  739. YPS163_sample_2_100
  740. YPS128_sample_2_100
  741. UWOPS872421r2_sample_2_100
  742. LASPR_sample_2_100
  743. BC186_YPS606_sample_2_100
  744. YPS606_sample_2_100
  745. hek01135_sample_6_036
  746. hek00088_sample_6_052
  747. UCD_61190_sample_6_051
  748. UWOPS837873r_sample_1_066
  749. DY8_sample_1_080
  750. hek03066_sample_1_055
  751. T7_sample_1_100
  752. BW1BW12_sample_1_100
  753. IY36_sample_1_100
  754. IY41_sample_1_100
  755. hek03027_sample_1_100
  756. hek00400_sample_1_100
  757. hek00673_sample_1_100
  758. hek00729_sample_1_100
  759. hek01267_sample_1_100
  760. hek01422_sample_1_100
  761. hek01172_sample_1_100
  762. hek01205_sample_1_100
  763. hek00463_sample_1_100
  764. hek02773_sample_1_100
  765. hek02926_sample_1_100
  766. hek02707_sample_1_100
  767. hek02509_sample_1_100
  768. hek02518_sample_1_100
  769. hek02503_sample_1_100
  770. hek00497_sample_1_100
  771. hek02441_sample_1_100
  772. hek00012_sample_1_100
  773. hek01027_sample_1_100
  774. hek02439_sample_1_100
  775. Y389_sample_4_028
  776. TY12_sample_3_040
  777. TY19_sample_3_040
  778. YB3224_sample_3_044
  779. Y393HENRICI_31_sample_4_052
  780. Y1649_sample_4_063
  781. Y2190_sample_4_063
  782. Y383Henrici_3_sample_4_063
  783. UCD_4014_sample_4_058
  784. Y2253_sample_3_066
  785. K11g_sample_3_100
  786. cer_Y12617_sample_3_087
  787. cer_Y12717_sample_3_089
  788. Y999_sample_3_087
  789. Y7563_sample_3_086
  790. BF_4_sample_3_091
  791. cer_Y7662_sample_3_099
  792. Y12844_sample_3_100
  793. UCD_852_sample_3_100
  794. Y11574_sample_3_100
  795. UC5_UCD612_sample_3_100
  796. cer_YB1779_sample_3_100
  797. UCD_7915_sample_3_100
  798. UCD_629_sample_3_100
  799. cer_YB1013_sample_3_100
  800. Y1791_sample_3_100
  801. Y12679_sample_3_100
  802. Y9r_sample_3_100
  803. Y9g_sample_3_100
  804. Y12_cer_y12633_sample_3_100
  805. cer_Y12769_sample_3_100
  806. cer_Y12658_sample_3_100
  807. Y17447_sample_3_100
  808. ;
  809. End;
  810.  
  811. Begin trees; [Treefile saved Thu Aug 14 12:29:15 2014]
  812. [!
  813. >Data file = /Users/msteiper/test
  814. >Tree(s) input to PAUP* as user-defined tree(s)
  815. ]
  816. Translate
  817. 1 hek02580_sample_8_100,
  818. 2 hek02635_sample_8_100,
  819. 3 hek02724_sample_8_100,
  820. 4 hek02978_sample_8_100,
  821. 5 hek02714_sample_8_100,
  822. 6 hek02887_sample_8_100,
  823. 7 hek02587_sample_8_100,
  824. 8 hek02588_sample_8_100,
  825. 9 M22_sample_8_100,
  826. 10 DBVPG1373_sample_8_100,
  827. 11 mjj975_sample_8_100,
  828. 12 mjj978_sample_8_100,
  829. 13 mjj981_sample_8_100,
  830. 14 asc215_sample_8_100,
  831. 15 L1374_sample_8_100,
  832. 16 L1528_sample_8_100,
  833. 17 DBVPG1106_sample_8_100,
  834. 18 DBVPG1788_sample_8_100,
  835. 19 DBVPG6765_sample_8_100,
  836. 20 cer_Y1532_sample_8_100,
  837. 21 TOT_sample_8_100,
  838. 22 hek01639_sample_8_100,
  839. 23 WE372_sample_8_100,
  840. 24 sacchy1_sample_8_100,
  841. 25 sacchy_15_sample_8_100,
  842. 26 hek01876_sample_8_100,
  843. 27 RM111a_sample_8_100,
  844. 28 hek02583_sample_8_100,
  845. 29 BC187_UCD2120_sample_8_086,
  846. 30 hek00221_sample_8_100,
  847. 31 hek00290_sample_8_099,
  848. 32 hek01958_sample_8_100,
  849. 33 kal_1_sample_8_100,
  850. 34 kal_2_sample_8_100,
  851. 35 kal_K3_sample_8_100,
  852. 36 kal_4_sample_8_100,
  853. 37 kal__1_sample_8_100,
  854. 38 kal__2_sample_8_100,
  855. 39 Y12657_sample_8_100,
  856. 40 cer_Y17449_sample_8_100,
  857. 41 kal__3_sample_8_100,
  858. 42 kal__4_sample_8_100,
  859. 43 sacchy_131_sample_8_067,
  860. 44 sacchy_132_sample_8_072,
  861. 45 ark_1_sample_9_055,
  862. 46 ark_2_sample_9_054,
  863. 47 sacchy_4_sample_8_073,
  864. 48 hek02575_sample_8_076,
  865. 49 hek02884_sample_8_086,
  866. 50 hek02809_sample_8_081,
  867. 51 sacchy_14_sample_8_072,
  868. 52 sacchy_171_sample_9_054,
  869. 53 sacchy_172_sample_9_054,
  870. 54 hek00415_sample_8_082,
  871. 55 BC_2_sample_9_099,
  872. 56 BC_1_sample_9_099,
  873. 57 sacchy_5_sample_9_099,
  874. 58 sacchy_16_sample_9_099,
  875. 59 sacchy_9_sample_9_100,
  876. 60 sacchy_111_sample_9_100,
  877. 61 sacchy_112_sample_9_100,
  878. 62 sacchy_2_sample_9_100,
  879. 63 sacchy_31_sample_9_100,
  880. 64 sacchy_32_sample_9_100,
  881. 65 sacchy_71_sample_9_100,
  882. 66 sacchy_72_sample_9_100,
  883. 67 Y502_sample_8_068,
  884. 68 I14_sample_8_069,
  885. 69 DCM6_sample_8_056,
  886. 70 DCM21_sample_8_056,
  887. 71 Y963_sample_1_052,
  888. 72 LAS_AL_sample_5_085,
  889. 73 BF_5_sample_8_056,
  890. 74 UCD_05780_sample_8_049,
  891. 75 BF_2_sample_8_056,
  892. 76 OB1_5D_sample_8_056,
  893. 77 OB4_8B_sample_8_055,
  894. 78 YIIC17E5g_sample_8_060,
  895. 79 BF_7_sample_8_059,
  896. 80 BF_8_sample_8_060,
  897. 81 BF_6_sample_8_057,
  898. 82 BF_9_sample_8_049,
  899. 83 TY08_sample_8_060,
  900. 84 YB191A_sample_8_046,
  901. 85 DBVPG1853_sample_8_053,
  902. 86 cer_Y1547_sample_8_070,
  903. 87 Y1545_sample_8_065,
  904. 88 Y2222_sample_8_054,
  905. 89 mjj653_sample_5_085,
  906. 90 FL100_sample_5_099,
  907. 91 T73r_sample_5_085,
  908. 92 Sigma1278b_sample_5_050,
  909. 93 W303_sample_5_100,
  910. 94 NCYC361r_sample_5_100,
  911. 95 322134Sr_sample_5_100,
  912. 96 CBS7960_sample_5_050,
  913. 97 T73g_sample_5_051,
  914. 98 YIIC17E5r_sample_5_100,
  915. 99 K11r_sample_5_100,
  916. 100 mjj280_sample_5_100,
  917. 101 asc324g_sample_5_099,
  918. 102 asc324r_sample_5_100,
  919. 103 YAD145_FY4_sample_5_100,
  920. 104 S288C_sample_5_100,
  921. 105 322134Sg_sample_8_054,
  922. 106 mj63_sample_8_046,
  923. 107 mj14_sample_7_100,
  924. 108 mj14p_sample_7_100,
  925. 109 mj34_sample_7_100,
  926. 110 mj13_sample_7_100,
  927. 111 mj60_sample_7_100,
  928. 112 mj33_sample_7_100,
  929. 113 mj35_sample_7_100,
  930. 114 273614N_sample_8_045,
  931. 115 NCYC361g_sample_8_044,
  932. 116 Y636_sample_4_055,
  933. 117 asc382r_sample_8_055,
  934. 118 asc382g_sample_8_056,
  935. 119 YS2_sample_4_094,
  936. 120 YS4_sample_4_099,
  937. 121 Y7177_sample_4_094,
  938. 122 Y12632_sample_4_048,
  939. 123 Y6341_sample_4_096,
  940. 124 UCD_854_sample_4_064,
  941. 125 Y2183_sample_4_097,
  942. 126 YS9_sample_4_080,
  943. 127 YB432_sample_4_099,
  944. 128 CBS7764_sample_4_097,
  945. 129 mj3_sample_4_100,
  946. 130 mj23_sample_4_100,
  947. 131 mj5_sample_4_100,
  948. 132 YB515_sample_4_091,
  949. 133 Y5510_sample_4_100,
  950. 134 Y2184_sample_4_100,
  951. 135 IL01_sample_6_050,
  952. 136 YB908_sample_6_051,
  953. 137 Y11878_sample_6_039,
  954. 138 G86_sample_6_054,
  955. 139 G89_sample_6_051,
  956. 140 yar529515_sample_6_061,
  957. 141 yar529516_sample_6_065,
  958. 142 yar529518_sample_6_071,
  959. 143 yar529517_sample_6_068,
  960. 144 G205_sample_6_066,
  961. 145 YB594_sample_8_050,
  962. 146 YB596_sample_3_052,
  963. 147 Y6277_sample_8_046,
  964. 148 mjj320_sample_8_047,
  965. 149 mjj326_sample_8_040,
  966. 150 mjj421g_sample_8_040,
  967. 151 mjj428_sample_7_027,
  968. 152 Y27788_sample_8_035,
  969. 153 YB427_sample_8_028,
  970. 154 DBVPG6040_sample_3_033,
  971. 155 378604X_sample_3_026,
  972. 156 mjj421r_sample_5_042,
  973. 157 YB1952_sample_8_024,
  974. 158 Y1778_sample_8_023,
  975. 159 mj58_sample_3_045,
  976. 160 mj59_sample_3_045,
  977. 161 mj57_sample_3_046,
  978. 162 mj36_sample_3_045,
  979. 163 mjj436_to_mjj451_sample_6_032,
  980. 164 Y10988_sample_3_041,
  981. 165 cer_YB210_sample_3_024,
  982. 166 LAS_PA_sample_6_052,
  983. 167 DBVPG6044_sample_6_100,
  984. 168 NCYC110_sample_6_097,
  985. 169 PW5_sample_6_100,
  986. 170 SK1_sample_6_084,
  987. 171 Y55_sample_6_075,
  988. 172 YB4085r1_sample_6_064,
  989. 173 YB4085r2_sample_6_065,
  990. 174 YB4081_sample_6_059,
  991. 175 Y1438_sample_6_063,
  992. 176 mjj269_sample_6_074,
  993. 177 Y10_cer_y7567_sample_6_074,
  994. 178 UWOPS872421r1_sample_6_075,
  995. 179 UWOPS052173_sample_6_099,
  996. 180 UWOPS052272_sample_6_099,
  997. 181 UWOPS034614_sample_6_099,
  998. 182 YB4506_sample_6_092,
  999. 183 UWOPS837873g_sample_6_066,
  1000. 184 YPS1009_sample_2_100,
  1001. 185 CP1_sample_2_100,
  1002. 186 NC02_sample_2_100,
  1003. 187 Y12603_sample_2_100,
  1004. 188 TN1TN5C_sample_2_100,
  1005. 189 hek01146_sample_2_100,
  1006. 190 hek00411_sample_2_100,
  1007. 191 hek02595_sample_2_100,
  1008. 192 BF_3_sample_2_071,
  1009. 193 IN1_sample_2_053,
  1010. 194 YPS163_sample_2_100,
  1011. 195 YPS128_sample_2_100,
  1012. 196 UWOPS872421r2_sample_2_100,
  1013. 197 LASPR_sample_2_100,
  1014. 198 BC186_YPS606_sample_2_100,
  1015. 199 YPS606_sample_2_100,
  1016. 200 hek01135_sample_6_036,
  1017. 201 hek00088_sample_6_052,
  1018. 202 UCD_61190_sample_6_051,
  1019. 203 UWOPS837873r_sample_1_066,
  1020. 204 DY8_sample_1_080,
  1021. 205 hek03066_sample_1_055,
  1022. 206 T7_sample_1_100,
  1023. 207 BW1BW12_sample_1_100,
  1024. 208 IY36_sample_1_100,
  1025. 209 IY41_sample_1_100,
  1026. 210 hek03027_sample_1_100,
  1027. 211 hek00400_sample_1_100,
  1028. 212 hek00673_sample_1_100,
  1029. 213 hek00729_sample_1_100,
  1030. 214 hek01267_sample_1_100,
  1031. 215 hek01422_sample_1_100,
  1032. 216 hek01172_sample_1_100,
  1033. 217 hek01205_sample_1_100,
  1034. 218 hek00463_sample_1_100,
  1035. 219 hek02773_sample_1_100,
  1036. 220 hek02926_sample_1_100,
  1037. 221 hek02707_sample_1_100,
  1038. 222 hek02509_sample_1_100,
  1039. 223 hek02518_sample_1_100,
  1040. 224 hek02503_sample_1_100,
  1041. 225 hek00497_sample_1_100,
  1042. 226 hek02441_sample_1_100,
  1043. 227 hek00012_sample_1_100,
  1044. 228 hek01027_sample_1_100,
  1045. 229 hek02439_sample_1_100,
  1046. 230 Y389_sample_4_028,
  1047. 231 TY12_sample_3_040,
  1048. 232 TY19_sample_3_040,
  1049. 233 YB3224_sample_3_044,
  1050. 234 Y393HENRICI_31_sample_4_052,
  1051. 235 Y1649_sample_4_063,
  1052. 236 Y2190_sample_4_063,
  1053. 237 Y383Henrici_3_sample_4_063,
  1054. 238 UCD_4014_sample_4_058,
  1055. 239 Y2253_sample_3_066,
  1056. 240 K11g_sample_3_100,
  1057. 241 cer_Y12617_sample_3_087,
  1058. 242 cer_Y12717_sample_3_089,
  1059. 243 Y999_sample_3_087,
  1060. 244 Y7563_sample_3_086,
  1061. 245 BF_4_sample_3_091,
  1062. 246 cer_Y7662_sample_3_099,
  1063. 247 Y12844_sample_3_100,
  1064. 248 UCD_852_sample_3_100,
  1065. 249 Y11574_sample_3_100,
  1066. 250 UC5_UCD612_sample_3_100,
  1067. 251 cer_YB1779_sample_3_100,
  1068. 252 UCD_7915_sample_3_100,
  1069. 253 UCD_629_sample_3_100,
  1070. 254 cer_YB1013_sample_3_100,
  1071. 255 Y1791_sample_3_100,
  1072. 256 Y12679_sample_3_100,
  1073. 257 Y9r_sample_3_100,
  1074. 258 Y9g_sample_3_100,
  1075. 259 Y12_cer_y12633_sample_3_100,
  1076. 260 cer_Y12769_sample_3_100,
  1077. 261 cer_Y12658_sample_3_100,
  1078. 262 Y17447_sample_3_100
  1079. ;
  1080. tree PAUP_1 = [&R] ((((((((((((((((((((((((((((((((1:1,2:1):1,3:1):1,4:1):1,5:1):1,6:1):1,7:1):1,8:1):1,9:1):1,(10:1,(11:1,(12:1,13:1):1):1):1):1,14:1):1,(((15:1,16:1):1,17:1):1,(18:1,(19:1,20:1):1):1):1):1,(21:1,(((22:1,23:1):1,(24:1,25:1):1):1,(26:1,(27:1,(28:1,(29:1,(30:1,(31:1,32:1):1):1):1):1):1):1):1):1):1,((33:1,34:1):1,((35:1,36:1):1,((37:1,38:1):1,(39:1,(40:1,(41:1,42:1):1):1):1):1):1):1):1,((((43:1,44:1):1,(45:1,46:1):1):1,47:1):1,(((48:1,49:1):1,(50:1,51:1):1):1,(((52:1,53:1):1,54:1):1,((((55:1,56:1):1,57:1):1,58:1):1,((((59:1,60:1):1,61:1):1,62:1):1,((63:1,64:1):1,(65:1,66:1):1):1):1):1):1):1):1):1,67:1):1,(68:1,(69:1,(70:1,(71:1,(72:1,(73:1,(74:1,(75:1,(76:1,77:1):1):1):1):1):1):1):1):1):1):1,78:1):1,((((79:1,80:1):1,81:1):1,82:1):1,(((83:1,84:1):1,85:1):1,(86:1,(87:1,88:1):1):1):1):1):1,(((89:1,90:1):1,91:1):1,(92:1,(93:1,(94:1,(95:1,(((96:1,97:1):1,98:1):1,(99:1,(100:1,(101:1,(102:1,(103:1,104:1):1):1):1):1):1):1):1):1):1):1):1):1,105:1):1,(106:1,(((107:1,108:1):1,109:1):1,((110:1,111:1):1,(112:1,113:1):1):1):1):1):1,(114:1,(115:1,(116:1,(117:1,118:1):1):1):1):1):1,((((119:1,120:1):1,121:1):1,122:1):1,(123:1,((124:1,125:1):1,(126:1,(127:1,(128:1,(((129:1,130:1):1,131:1):1,(132:1,(133:1,134:1):1):1):1):1):1):1):1):1):1):1,(((135:1,136:1):1,137:1):1,((138:1,139:1):1,(140:1,(141:1,(142:1,(143:1,144:1):1):1):1):1):1):1):1,(145:1,146:1):1):1,(147:1,(148:1,(149:1,150:1):1):1):1):1,(151:1,152:1):1):1,153:1):1,(154:1,155:1):1):1,(156:1,(157:1,158:1):1):1):1,((((159:1,160:1):1,161:1):1,162:1):1,(((163:1,164:1):1,165:1):1,(166:1,(((((167:1,168:1):1,169:1):1,170:1):1,171:1):1,(((((172:1,173:1):1,174:1):1,175:1):1,(176:1,177:1):1):1,(178:1,((((179:1,180:1):1,181:1):1,182:1):1,(183:1,((((((((((184:1,185:1):1,186:1):1,187:1):1,188:1):1,(189:1,(190:1,191:1):1):1):1,192:1):1,193:1):1,(194:1,((195:1,196:1):1,(197:1,(198:1,199:1):1):1):1):1):1,200:1):1,((201:1,202:1):1,(203:1,(204:1,(205:1,((((206:1,207:1):1,208:1):1,209:1):1,(210:1,(211:1,(212:1,(213:1,((214:1,215:1):1,(216:1,(217:1,((((218:1,219:1):1,220:1):1,221:1):1,(222:1,(223:1,(224:1,(225:1,(226:1,(227:1,(228:1,229:1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1,230:1,((231:1,232:1):1,(233:1,(234:1,((((235:1,236:1):1,237:1):1,238:1):1,(239:1,(240:1,((((241:1,242:1):1,243:1):1,244:1):1,(245:1,(246:1,(247:1,(((((248:1,249:1):1,250:1):1,(251:1,(252:1,253:1):1):1):1,254:1):1,(255:1,(256:1,(((257:1,258:1):1,259:1):1,(260:1,(261:1,262:1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1):1;
  1081. End;
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