My Nginx logs:


   server {
        listen 80;
        server_name www.jira.myserver.com jira.myserver.com;
        access_log /home/myserver/www.myserver.com/myserver.buildout/var/log/jira-access.log;
        error_log /home/myserver/www.myserver.com/myserver.buildout/var/log/jira-error.log;

        location / {
            proxy_pass http://127.0.0.1:9999;
            proxy_set_header    Host            $host;
            proxy_set_header    X-Forwarded-Proto $remote_addr;
            proxy_set_header    X-Real-IP       $remote_addr;
            proxy_set_header    X-Forwarded-for $remote_addr;
            port_in_redirect off;
            proxy_redirect   http://127.0.0.1:9999/    /jira;
            proxy_connect_timeout 600;
        }

    }

    server {
        listen 80;
        server_name confluence.myserver.com www.confluence.myserver.com;
        access_log /home/myserver/www.myserver.com/myserver.buildout/var/log/confluence-access.log;
        error_log /home/myserver/www.myserver.com/myserver.buildout/var/log/confluence-error.log;

        location / {
            proxy_set_header    Host            $host;
            proxy_set_header    X-Forwarded-Proto $remote_addr;
            proxy_pass http://127.0.0.1:8888/;
            proxy_set_header    X-Real-IP       $remote_addr;
            proxy_set_header    X-Forwarded-for $remote_addr;
            port_in_redirect off;
            proxy_redirect   http://127.0.0.1:8888/    /confluence;
            proxy_connect_timeout 600;
        }
    }


CONFLUENCE server.xml

<Server port="8020" shutdown="SHUTDOWN" debug="0">
    <Service name="Tomcat-Standalone">
        <Connector className="org.apache.coyote.tomcat4.CoyoteConnector" port="8888" minProcessors="5"
                   maxProcessors="75"
                   enableLookups="true" redirectPort="8443" acceptCount="10" debug="0" connectionTimeout="20000"
                   useURIValidationHack="false" URIEncoding="UTF-8"/>
        <Engine name="Standalone" defaultHost="localhost" debug="0">
            <Host name="localhost" debug="0" appBase="webapps" unpackWARs="true" autoDeploy="false">
                <Context path="/confluence" docBase="../confluence" debug="0" reloadable="false" useHttpOnly="true">
                    <Manager pathname="" />
                </Context>
            </Host>
        </Engine>
    </Service>
</Server>

JIRA server.xml

<?xml version="1.0" encoding="utf-8"?>
<Server port="9990" shutdown="SHUTDOWN">
    <Listener className="org.apache.catalina.core.AprLifecycleListener" SSLEngine="on"/>
    <Listener className="org.apache.catalina.core.JasperListener"/>
    <Listener className="org.apache.catalina.mbeans.GlobalResourcesLifecycleListener"/>
    <Service name="Catalina">
        <Connector port="9999"
                   maxThreads="250"
                   minSpareThreads="55"
                   connectionTimeout="30000"
                   enableLookups="false"
                   maxHttpHeaderSize="8192"
                   protocol="HTTP/1.1"
                   useBodyEncodingForURI="true"
                   redirectPort="8443"
                   acceptCount="100"
                   disableUploadTimeout="true"/>
        <Engine name="Catalina" defaultHost="localhost">
            <Host name="localhost" appBase="webapps" unpackWARs="true" autoDeploy="true">
                <Context path="/jira" docBase="${catalina.home}/atlassian-jira" reloadable="false" useHttpOnly="true">
                    <Resource name="UserTransaction" auth="Container" type="javax.transaction.UserTransaction"
                              factory="org.objectweb.jotm.UserTransactionFactory" jotm.timeout="60"/>
                    <Manager pathname=""/>
                </Context>
            </Host>
            <Valve className="org.apache.catalina.valves.AccessLogValve" resolveHosts="false"
                   pattern="%a %{jira.request.id}r %{jira.request.username}r %t &quot;%m %U%q %H&quot; %s %b %D &quot;%{Referer}i&quot; &quot;%{User-Agent}i&quot; &quot;%{jira.request.assession.id}r&quot;"/>
        </Engine>
    </Service>
</Server>