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By: a guest on May 8th, 2012  |  syntax: Python  |  size: 2.10 KB  |  hits: 23  |  expires: Never
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  1. ============ COMMAND =================
  2.   <command>
  3.     treeannotator
  4.         -heights $nodeheights
  5.     #if $selecttargettype.$selecttarget == "yes"
  6.         -target '$target'
  7.     #end if
  8. ============ COMMAND =================
  9.  
  10. ============ INTERFACE =================
  11.     <conditional name="selecttargettype">
  12.       <param name="selecttarget" type="select" label="Target tree type"
  13.           help="Use either the default Maximum Clade Credibility (MCC) tree or a
  14.          user-provided target tree." value="no">
  15.         <option value="no">MCC Tree</option>
  16.         <option value="yes">User Target Tree</option>
  17.       </param>
  18.       <when value="yes">
  19.         <param format="nexus" name="target" type="data" value="" label="Target tree file" />
  20.       </when>
  21.       <when value="no">
  22.           <param type="hidden" name="target" value="no" />
  23.       </when>
  24.     </conditional>
  25. ============ INTERFACE =================
  26.  
  27. ============ ERROR =================
  28. galaxy.jobs.handler DEBUG 2012-05-07 23:33:47,739 dispatching job 946 to drmaa runner
  29. galaxy.jobs.handler INFO 2012-05-07 23:33:47,813 (946) Job dispatchedgalaxy.jobs.runners.drmaa ERROR 2012-05-07 23:33:48,038 failure running job 946
  30. Traceback (most recent call last):  File "/galaxy/run/dev/lib/galaxy/jobs/runners/drmaa.py", line 144, in queue_job    job_wrapper.prepare()  File "/galaxy/run/dev/lib/galaxy/jobs/__init__.py", line 173, in prepare    self.command_line = self.tool.build_command_line( param_dict )  File "/galaxy/run/dev/lib/galaxy/tools/__init__.py", line 2028, in build_command_line
  31.     command_line = fill_template( self.command, context=param_dict )  File "/galaxy/run/dev/lib/galaxy/util/template.py", line 9, in fill_template    return str( Template( source=template_text, searchList=[context] ) )  File "/galaxy/run/dev/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs2.egg/Cheetah/Template.py", line 1004, in __str__
  32.     return getattr(self, mainMethName)()  File "cheetah_DynamicallyCompiledCheetahTemplate_1336448027_9_11868.py", line 88, in respond
  33. AttributeError: 'dict' object has no attribute 'VFFSL'
  34. ============ ERROR =================
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