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  1. Cloning into 'rmarkdown'...
  2. remote: Counting objects: 7938, done.
  3. remote: Compressing objects: 100% (58/58), done.
  4. remote: Total 7938 (delta 18), reused 0 (delta 0)
  5. Receiving objects: 100% (7938/7938), 8.08 MiB | 4.29 MiB/s, done.
  6. Resolving deltas: 100% (5293/5293), done.
  7. Checking connectivity... done.
  8. Already up-to-date.
  9. Branch v0.98.1000 set up to track remote branch v0.98.1000 from origin.
  10. Switched to a new branch 'v0.98.1000'
  11. * checking for file ‘rmarkdown/DESCRIPTION’ ... OK
  12. * preparing ‘rmarkdown’:
  13. * checking DESCRIPTION meta-information ... OK
  14. * checking for LF line-endings in source and make files
  15. * checking for empty or unneeded directories
  16. Removed empty directory ‘rmarkdown/tools’
  17. * building ‘rmarkdown_0.3.1.tar.gz’
  18.  
  19. Cloning into 'packrat'...
  20. remote: Counting objects: 5294, done.
  21. remote: Total 5294 (delta 0), reused 0 (delta 0)
  22. Receiving objects: 100% (5294/5294), 10.12 MiB | 2.75 MiB/s, done.
  23. Resolving deltas: 100% (2975/2975), done.
  24. Checking connectivity... done.
  25. Already up-to-date.
  26. Branch v0.98.1000 set up to track remote branch v0.98.1000 from origin.
  27. Switched to a new branch 'v0.98.1000'
  28. * checking for file ‘packrat/DESCRIPTION’ ... OK
  29. * preparing ‘packrat’:
  30. * checking DESCRIPTION meta-information ... OK
  31. * checking for LF line-endings in source and make files
  32. * checking for empty or unneeded directories
  33. Removed empty directory ‘packrat/announce’
  34. Removed empty directory ‘packrat/internal’
  35. Removed empty directory ‘packrat/scenarios’
  36. * building ‘packrat_0.4.0.12.tar.gz’
  37.  
  38. ==> Starting build()...
  39. -- The C compiler identification is GNU 4.9.1
  40. -- The CXX compiler identification is GNU 4.9.1
  41. -- Check for working C compiler: /usr/bin/cc
  42. -- Check for working C compiler: /usr/bin/cc -- works
  43. -- Detecting C compiler ABI info
  44. -- Detecting C compiler ABI info - done
  45. -- Check for working CXX compiler: /usr/bin/c++
  46. -- Check for working CXX compiler: /usr/bin/c++ -- works
  47. -- Detecting CXX compiler ABI info
  48. -- Detecting CXX compiler ABI info - done
  49. -- LSB release: arch
  50. -- Boost version: 1.56.0
  51. -- Found the following Boost libraries:
  52. -- date_time
  53. -- filesystem
  54. -- iostreams
  55. -- program_options
  56. -- regex
  57. -- signals
  58. -- system
  59. -- thread
  60. -- chrono
  61. -- Performing Test HAVE_SCANDIR_POSIX
  62. -- Performing Test HAVE_SCANDIR_POSIX - Success
  63. -- Looking for SA_NOCLDWAIT
  64. -- Looking for SA_NOCLDWAIT - found
  65. -- Looking for SO_PEERCRED
  66. -- Looking for SO_PEERCRED - found
  67. -- Looking for inotify_init1
  68. -- Looking for inotify_init1 - found
  69. -- Looking for getpeereid
  70. -- Looking for getpeereid - not found
  71. -- Looking for setresuid
  72. -- Looking for setresuid - found
  73. -- Found LibR: /usr/lib64/R
  74. -- Found R: /usr/lib64/R
  75. -- Performing Test LIBR_MINIMUM_VERSION
  76. -- Performing Test LIBR_MINIMUM_VERSION - Success
  77. -- Looking for Q_WS_X11
  78. -- Looking for Q_WS_X11 - found
  79. -- Looking for Q_WS_WIN
  80. -- Looking for Q_WS_WIN - not found
  81. -- Looking for Q_WS_QWS
  82. -- Looking for Q_WS_QWS - not found
  83. -- Looking for Q_WS_MAC
  84. -- Looking for Q_WS_MAC - not found
  85. -- Found Qt4: /usr/lib/qt4/bin/qmake (found suitable version "4.8.6", minimum required is "4.8.0")
  86. -- Configuring done
  87. -- Generating done
  88. -- Build files have been written to: /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/build
  89. ==> Entering fakeroot environment...
  90. ==> Starting package()...
  91. Scanning dependencies of target gwt_build
  92. Scanning dependencies of target rstudio-core
  93. [ 0%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Assert.cpp.o
  94. /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/cpp/core/Assert.cpp: In function ‘void boost::assertion_failed(const char*, const char*, const char*, long int)’:
  95. /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/cpp/core/Assert.cpp:40:10: error: ‘boost::core::log’ has not been declared
  96. core::log::logWarningMessage(msg, location);
  97. ^
  98. /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/cpp/core/Assert.cpp: In function ‘void boost::assertion_failed_msg(const char*, const char*, const char*, const char*, long int)’:
  99. /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/cpp/core/Assert.cpp:64:10: error: ‘boost::core::log’ has not been declared
  100. core::log::logWarningMessage(message, location);
  101. ^
  102. src/cpp/core/CMakeFiles/rstudio-core.dir/build.make:54: recipe for target 'src/cpp/core/CMakeFiles/rstudio-core.dir/Assert.cpp.o' failed
  103. make[2]: *** [src/cpp/core/CMakeFiles/rstudio-core.dir/Assert.cpp.o] Error 1
  104. CMakeFiles/Makefile2:178: recipe for target 'src/cpp/core/CMakeFiles/rstudio-core.dir/all' failed
  105. make[1]: *** [src/cpp/core/CMakeFiles/rstudio-core.dir/all] Error 2
  106. make[1]: *** Waiting for unfinished jobs....
  107. Buildfile: /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/build.xml
  108.  
  109. ext:
  110. [jscomp] Compiling 43 file(s) with 41 extern(s)
  111. [jscomp] 0 error(s), 0 warning(s)
  112.  
  113. javac:
  114. [mkdir] Created dir: /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/bin
  115. [javac] Compiling 10 source files to /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/bin
  116. [javac] Note: Some input files use or override a deprecated API.
  117. [javac] Note: Recompile with -Xlint:deprecation for details.
  118. [javac] Compiling 1468 source files to /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/bin
  119. [copy] Copying 691 files to /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/bin
  120.  
  121. gwtc:
  122. [java] Sep 11, 2014 12:35:16 PM java.util.prefs.FileSystemPreferences$1 run
  123. [java] WARNING: Couldn't create user preferences directory. User preferences are unusable.
  124. [java] Sep 11, 2014 12:35:16 PM java.util.prefs.FileSystemPreferences$1 run
  125. [java] WARNING: java.io.IOException: Permission denied
  126. [java] Compiling module org.rstudio.studio.RStudio
  127. [java] Exception in thread "Timer-0" java.lang.SecurityException: Could not lock User prefs. Lock file access denied.
  128. [java] at java.util.prefs.FileSystemPreferences.checkLockFile0ErrorCode(FileSystemPreferences.java:936)
  129. [java] at java.util.prefs.FileSystemPreferences.lockFile(FileSystemPreferences.java:925)
  130. [java] at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:729)
  131. [java] at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
  132. [java] at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
  133. [java] at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
  134. [java] at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
  135. [java] at java.util.TimerThread.mainLoop(Timer.java:555)
  136. [java] at java.util.TimerThread.run(Timer.java:505)
  137. [java] Compiling 2 permutations
  138. [java] Compiling permutation 0...
  139. [java] Process output
  140. [java] Compiling
  141. [java] Compiling permutation 1...
  142. [java] Compile of permutations succeeded
  143. [java] Linking into /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/www/rstudio; Writing extras to /home/hwkiller/Builds/rstudio-desktop-git/src/rstudio/src/gwt/extras/rstudio
  144. [java] Link succeeded
  145. [java] Compilation succeeded -- 188.136s
  146. [java] Exception in thread "Thread-2" java.lang.SecurityException: Could not lock User prefs. Lock file access denied.
  147. [java] at java.util.prefs.FileSystemPreferences.checkLockFile0ErrorCode(FileSystemPreferences.java:936)
  148. [java] at java.util.prefs.FileSystemPreferences.lockFile(FileSystemPreferences.java:925)
  149. [java] at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:729)
  150. [java] at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
  151. [java] at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
  152. [java] at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
  153. [java] at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
  154.  
  155. build:
  156.  
  157. BUILD SUCCESSFUL
  158. Total time: 3 minutes 53 seconds
  159. [ 0%] Built target gwt_build
  160. Makefile:137: recipe for target 'all' failed
  161. make: *** [all] Error 2
  162. ==> ERROR: A failure occurred in package().
  163. Aborting...
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