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chironex

interp3d compile-time errors

chironex
Jun 29th, 2011
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  1. [jordango@cmodws40 Python OUT workspace]$ python setup_interp3d.py build_ext --inplace
  2. running build_ext
  3. cythoning interp3d.pyx to interp3d.c
  4. building 'interp3d' extension
  5. gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -O2 -I/home/jordango/Desktop/epd-7.0-2-rh5-x86/include -fPIC -I/home/jordango/Desktop/epd-7.0-2-rh5-x86/include/python2.7 -c interp3d.c -o build/temp.linux-i686-2.7/interp3d.o
  6. interp3d.c:225:31: error: numpy/arrayobject.h: No such file or directory
  7. interp3d.c:226:31: error: numpy/ufuncobject.h: No such file or directory
  8. In file included from interp3d.c:227:
  9. 3d_interp_v1/natural.h:19: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
  10. 3d_interp_v1/natural.h:21: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
  11. 3d_interp_v1/natural.h:24: error: expected ')' before '*' token
  12. 3d_interp_v1/natural.h:26: error: expected ')' before '*' token
  13. 3d_interp_v1/natural.h:30: error: expected declaration specifiers or '...' before 'mesh'
  14. interp3d.c:334: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_int8_t'
  15. interp3d.c:336: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_int16_t'
  16. interp3d.c:338: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_int32_t'
  17. interp3d.c:340: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_int64_t'
  18. interp3d.c:342: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_uint8_t'
  19. interp3d.c:344: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_uint16_t'
  20. interp3d.c:346: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_uint32_t'
  21. interp3d.c:348: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_uint64_t'
  22. interp3d.c:350: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_float32_t'
  23. interp3d.c:352: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_float64_t'
  24. interp3d.c:354: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_int_t'
  25. interp3d.c:356: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_long_t'
  26. interp3d.c:358: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_intp_t'
  27. interp3d.c:360: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_uintp_t'
  28. interp3d.c:362: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_uint_t'
  29. interp3d.c:364: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_ulong_t'
  30. interp3d.c:366: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_float_t'
  31. interp3d.c:368: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_double_t'
  32. interp3d.c:370: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_longdouble_t'
  33. interp3d.c:372: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_8interp3d_DT_t'
  34. interp3d.c:396: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_cfloat_t'
  35. interp3d.c:398: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_cdouble_t'
  36. interp3d.c:400: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_clongdouble_t'
  37. interp3d.c:402: error: expected '=', ',', ';', 'asm' or '__attribute__' before '__pyx_t_5numpy_complex_t'
  38. interp3d.c:546: error: expected specifier-qualifier-list before 'PyArrayObject'
  39. interp3d.c:829: error: expected ')' before '*' token
  40. interp3d.c:830: error: expected ')' before '*' token
  41. interp3d.c:831: error: expected ')' before '*' token
  42. interp3d.c:835: error: '__pyx_t_8interp3d_DT_t' undeclared here (not in a function)
  43. interp3d.c: In function '__pyx_pf_8interp3d_8interp3d___init__':
  44. interp3d.c:962: error: 'PyArrayObject' undeclared (first use in this function)
  45. interp3d.c:962: error: (Each undeclared identifier is reported only once
  46. interp3d.c:962: error: for each function it appears in.)
  47. interp3d.c:962: error: '__pyx_v_x' undeclared (first use in this function)
  48. interp3d.c:963: error: '__pyx_v_y' undeclared (first use in this function)
  49. interp3d.c:964: error: '__pyx_v_z' undeclared (first use in this function)
  50. interp3d.c:965: error: '__pyx_v_u' undeclared (first use in this function)
  51. interp3d.c:966: error: '__pyx_v_v' undeclared (first use in this function)
  52. interp3d.c:967: error: '__pyx_v_w' undeclared (first use in this function)
  53. interp3d.c:1059: error: expected expression before ')' token
  54. interp3d.c:1060: error: expected expression before ')' token
  55. interp3d.c:1061: error: expected expression before ')' token
  56. interp3d.c:1062: error: expected expression before ')' token
  57. interp3d.c:1063: error: expected expression before ')' token
  58. interp3d.c:1064: error: expected expression before ')' token
  59. interp3d.c:1068: error: expected expression before ')' token
  60. interp3d.c:1069: error: expected expression before ')' token
  61. interp3d.c:1070: error: expected expression before ')' token
  62. interp3d.c:1071: error: expected expression before ')' token
  63. interp3d.c:1072: error: expected expression before ')' token
  64. interp3d.c:1073: error: expected expression before ')' token
  65. interp3d.c:1251: error: expected expression before ')' token
  66. interp3d.c:1279: error: expected expression before ')' token
  67. interp3d.c:1307: error: expected expression before ')' token
  68. interp3d.c:1335: error: expected expression before ')' token
  69. interp3d.c:1363: error: expected expression before ')' token
  70. interp3d.c:1391: error: expected expression before ')' token
  71. interp3d.c:1401: warning: assignment makes pointer from integer without a cast
  72. interp3d.c:1410: warning: assignment from incompatible pointer type
  73. interp3d.c:1419: warning: passing argument 1 of 'buildMesh' from incompatible pointer type
  74. interp3d.c:1419: warning: passing argument 3 of 'buildMesh' from incompatible pointer type
  75. interp3d.c: At top level:
  76. interp3d.c:1458: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
  77. interp3d.c: In function '__pyx_pf_8interp3d_8interp3d_1interpolatePoint':
  78. interp3d.c:1691: error: 'struct __pyx_vtabstruct_8interp3d_interp3d' has no member named 'interpolatePoint'
  79. interp3d.c: In function '__pyx_pf_8interp3d_8interp3d_2clearData':
  80. interp3d.c:1729: warning: passing argument 1 of 'freeMesh' from incompatible pointer type
  81. interp3d.c: In function '__pyx_pf_5numpy_7ndarray___getbuffer__':
  82. interp3d.c:1771: error: 'PyArray_Descr' undeclared (first use in this function)
  83. interp3d.c:1771: error: '__pyx_v_descr' undeclared (first use in this function)
  84. interp3d.c:1816: error: 'PyArrayObject' undeclared (first use in this function)
  85. interp3d.c:1816: error: expected expression before ')' token
  86. interp3d.c:1826: error: 'npy_intp' undeclared (first use in this function)
  87. interp3d.c:1871: error: expected expression before ')' token
  88. interp3d.c:1871: error: 'NPY_C_CONTIGUOUS' undeclared (first use in this function)
  89. interp3d.c:1914: error: expected expression before ')' token
  90. interp3d.c:1914: error: 'NPY_F_CONTIGUOUS' undeclared (first use in this function)
  91. interp3d.c:1947: error: expected expression before ')' token
  92. interp3d.c:1947: warning: assignment makes pointer from integer without a cast
  93. interp3d.c:2006: error: expected expression before ')' token
  94. interp3d.c:2006: error: subscripted value is neither array nor pointer
  95. interp3d.c:2018: error: expected expression before ')' token
  96. interp3d.c:2018: error: subscripted value is neither array nor pointer
  97. interp3d.c:2034: error: expected expression before ')' token
  98. interp3d.c:2046: error: expected expression before ')' token
  99. interp3d.c:2069: error: expected expression before ')' token
  100. interp3d.c:2081: error: expected expression before ')' token
  101. interp3d.c:2100: error: expected expression before ')' token
  102. interp3d.c:2101: error: expected expression before ')' token
  103. interp3d.c:2236: error: 'NPY_BYTE' undeclared (first use in this function)
  104. interp3d.c:2249: error: 'NPY_UBYTE' undeclared (first use in this function)
  105. interp3d.c:2262: error: 'NPY_SHORT' undeclared (first use in this function)
  106. interp3d.c:2275: error: 'NPY_USHORT' undeclared (first use in this function)
  107. interp3d.c:2288: error: 'NPY_INT' undeclared (first use in this function)
  108. interp3d.c:2301: error: 'NPY_UINT' undeclared (first use in this function)
  109. interp3d.c:2314: error: 'NPY_LONG' undeclared (first use in this function)
  110. interp3d.c:2327: error: 'NPY_ULONG' undeclared (first use in this function)
  111. interp3d.c:2340: error: 'NPY_LONGLONG' undeclared (first use in this function)
  112. interp3d.c:2353: error: 'NPY_ULONGLONG' undeclared (first use in this function)
  113. interp3d.c:2366: error: 'NPY_FLOAT' undeclared (first use in this function)
  114. interp3d.c:2379: error: 'NPY_DOUBLE' undeclared (first use in this function)
  115. interp3d.c:2392: error: 'NPY_LONGDOUBLE' undeclared (first use in this function)
  116. interp3d.c:2405: error: 'NPY_CFLOAT' undeclared (first use in this function)
  117. interp3d.c:2418: error: 'NPY_CDOUBLE' undeclared (first use in this function)
  118. interp3d.c:2431: error: 'NPY_CLONGDOUBLE' undeclared (first use in this function)
  119. interp3d.c:2444: error: 'NPY_OBJECT' undeclared (first use in this function)
  120. interp3d.c:2533: warning: assignment makes pointer from integer without a cast
  121. interp3d.c: In function '__pyx_pf_5numpy_7ndarray_1__releasebuffer__':
  122. interp3d.c:2591: error: 'PyArrayObject' undeclared (first use in this function)
  123. interp3d.c:2591: error: expected expression before ')' token
  124. interp3d.c:2614: error: 'npy_intp' undeclared (first use in this function)
  125. interp3d.c: In function '__pyx_f_5numpy_PyArray_MultiIterNew1':
  126. interp3d.c:2653: warning: assignment makes pointer from integer without a cast
  127. interp3d.c: In function '__pyx_f_5numpy_PyArray_MultiIterNew2':
  128. interp3d.c:2692: warning: assignment makes pointer from integer without a cast
  129. interp3d.c: In function '__pyx_f_5numpy_PyArray_MultiIterNew3':
  130. interp3d.c:2731: warning: assignment makes pointer from integer without a cast
  131. interp3d.c: In function '__pyx_f_5numpy_PyArray_MultiIterNew4':
  132. interp3d.c:2770: warning: assignment makes pointer from integer without a cast
  133. interp3d.c: In function '__pyx_f_5numpy_PyArray_MultiIterNew5':
  134. interp3d.c:2809: warning: assignment makes pointer from integer without a cast
  135. interp3d.c: At top level:
  136. interp3d.c:2835: error: expected ')' before '*' token
  137. interp3d.c:3548: error: expected ')' before '*' token
  138. interp3d.c:3628: error: expected ')' before '*' token
  139. interp3d.c: In function 'initinterp3d':
  140. interp3d.c:4083: error: 'struct __pyx_vtabstruct_8interp3d_interp3d' has no member named 'interpolatePoint'
  141. interp3d.c:4083: error: 'PyArrayObject' undeclared (first use in this function)
  142. interp3d.c:4083: error: expected expression before ')' token
  143. interp3d.c:4083: error: expected ';' before '__pyx_f_8interp3d_8interp3d_interpolatePoint'
  144. interp3d.c:4089: error: 'PyArray_Descr' undeclared (first use in this function)
  145. interp3d.c:4090: error: 'PyArrayIterObject' undeclared (first use in this function)
  146. interp3d.c:4091: error: 'PyArrayMultiIterObject' undeclared (first use in this function)
  147. interp3d.c:4093: error: 'PyUFuncObject' undeclared (first use in this function)
  148. error: command 'gcc' failed with exit status 1
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