euler:fraunhofer hofmann$ ffmpeg -f image2 -i tiff-16/img%03d.tiff -vcodec ffv1 -q:v 0 ffv1.mkv
ffmpeg version git-2013-01-08-1a088f6 Copyright (c) 2000-2013 the FFmpeg developers
  built on Jan  8 2013 10:40:35 with gcc 4.6 (Ubuntu/Linaro 4.6.3-1ubuntu5)
  configuration: --enable-gpl --enable-libass --enable-libfaac --enable-libfdk-aac --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-librtmp --enable-libtheora --enable-libvorbis --enable-libvpx --enable-x11grab --enable-libx264 --enable-nonfree --enable-version3 --enable-libschroedinger
  libavutil      52. 13.100 / 52. 13.100
  libavcodec     54. 86.100 / 54. 86.100
  libavformat    54. 59.106 / 54. 59.106
  libavdevice    54.  3.102 / 54.  3.102
  libavfilter     3. 32.100 /  3. 32.100
  libswscale      2.  1.103 /  2.  1.103
  libswresample   0. 17.102 /  0. 17.102
  libpostproc    52.  2.100 / 52.  2.100
Input #0, image2, from 'tiff-16/img%03d.tiff':
  Duration: 00:00:20.48, start: 0.000000, bitrate: N/A
    Stream #0:0: Video: tiff, gray16le, 512x512, 25 fps, 25 tbr, 25 tbn, 25 tbc
File 'ffv1.mkv' already exists. Overwrite ? [y/N] y
bits_per_raw_sample > 8, forcing coder 1
Output #0, matroska, to 'ffv1.mkv':
  Metadata:
    encoder         : Lavf54.59.106
    Stream #0:0: Video: ffv1 (FFV1 / 0x31564646), gray16le, 512x512, q=2-31, 200 kb/s, 1k tbn, 25 tbc
Stream mapping:
  Stream #0:0 -> #0:0 (tiff -> ffv1)
Press [q] to stop, [?] for help
frame=  512 fps= 72 q=0.0 Lsize=   59448kB time=00:00:20.48 bitrate=23779.3kbits/s
video:59442kB audio:0kB subtitle:0 global headers:0kB muxing overhead 0.009829%




euler:fraunhofer hofmann$ ffmpeg -i ffv1.mkv -f image2 -pix_fmt gray16le out/test%03d.tiff
ffmpeg version git-2013-01-08-1a088f6 Copyright (c) 2000-2013 the FFmpeg developers
  built on Jan  8 2013 10:40:35 with gcc 4.6 (Ubuntu/Linaro 4.6.3-1ubuntu5)
  configuration: --enable-gpl --enable-libass --enable-libfaac --enable-libfdk-aac --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-librtmp --enable-libtheora --enable-libvorbis --enable-libvpx --enable-x11grab --enable-libx264 --enable-nonfree --enable-version3 --enable-libschroedinger
  libavutil      52. 13.100 / 52. 13.100
  libavcodec     54. 86.100 / 54. 86.100
  libavformat    54. 59.106 / 54. 59.106
  libavdevice    54.  3.102 / 54.  3.102
  libavfilter     3. 32.100 /  3. 32.100
  libswscale      2.  1.103 /  2.  1.103
  libswresample   0. 17.102 /  0. 17.102
  libpostproc    52.  2.100 / 52.  2.100
Input #0, matroska,webm, from 'ffv1.mkv':
  Metadata:
    ENCODER         : Lavf54.59.106
  Duration: 00:00:20.48, start: 0.000000, bitrate: 23779 kb/s
    Stream #0:0: Video: ffv1 (FFV1 / 0x31564646), gray16le, 512x512, SAR 1:1 DAR 1:1, 25 fps, 25 tbr, 1k tbn, 1k tbc (default)
Output #0, image2, to 'out/test%03d.tiff':
  Metadata:
    encoder         : Lavf54.59.106
    Stream #0:0: Video: tiff, gray16le, 512x512 [SAR 1:1 DAR 1:1], q=2-31, 200 kb/s, 90k tbn, 25 tbc (default)
Stream mapping:
  Stream #0:0 -> #0:0 (ffv1 -> tiff)
Press [q] to stop, [?] for help
frame=  512 fps= 30 q=0.0 Lsize=N/A time=00:00:20.48 bitrate=N/A
video:201564kB audio:0kB subtitle:0 global headers:0kB muxing overhead -100.000011%
euler:fraunhofer hofmann$