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tinevez
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  1. Checking class loader: sun.misc.Launcher$AppClassLoader@73d16e93
  2. Checking URL: file:/D:/Users/Jean-Yves/Development/MaMuT/target/classes/
  3. Directory: D:\Users\Jean-Yves\Development\MaMuT\target\classes
  4. can write: true, up-to-date: true, : is IJ1: false
  5. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/sc/fiji/spim_data/2.0.1/spim_data-2.0.1.jar
  6. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/sc/fiji/bigdataviewer-core/2.3.0/bigdataviewer-core-2.3.0.jar
  7. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/cisd/jhdf5/14.12.0/jhdf5-14.12.0.jar
  8. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/com/google/code/gson/gson/2.2.4/gson-2.2.4.jar
  9. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/scijava/ui-behaviour/1.0.2/ui-behaviour-1.0.2.jar
  10. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar
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  17. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/sc/fiji/TrackMate_/3.1.1-SNAPSHOT/TrackMate_-3.1.1-SNAPSHOT.jar
  18. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/sc/fiji/fiji-lib/2.1.1/fiji-lib-2.1.1.jar
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  23. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imglib2/imglib2-algorithm-fft/0.1.2/imglib2-algorithm-fft-0.1.2.jar
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  30. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/tinyjee/jgraphx/jgraphx/1.10.4.1/jgraphx-1.10.4.1.jar
  31. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imagej/ij/1.50g/ij-1.50g.jar
  32. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imagej/imagej-common/0.20.1/imagej-common-0.20.1.jar
  33. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imglib2/imglib2-roi/0.4.2/imglib2-roi-0.4.2.jar
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  36. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imglib2/imglib2-algorithm/0.3.3/imglib2-algorithm-0.3.3.jar
  37. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-31/imglib2-ij-2.0.0-beta-31.jar
  38. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imglib2/imglib2-realtransform/2.0.0-beta-30/imglib2-realtransform-2.0.0-beta-30.jar
  39. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imglib2/imglib2-ui/2.0.0-beta-30/imglib2-ui-2.0.0-beta-30.jar
  40. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/scijava/scijava-common/2.53.0/scijava-common-2.53.0.jar
  41. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar
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  43. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/scijava/j3dcore/1.6.0-scijava-2/j3dcore-1.6.0-scijava-2.jar
  44. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/jogamp/gluegen/gluegen-rt/2.3.2/gluegen-rt-2.3.2.jar
  45. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/jogamp/jogl/jogl-all/2.3.2/jogl-all-2.3.2.jar
  46. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/scijava/j3dutils/1.6.0-scijava-2/j3dutils-1.6.0-scijava-2.jar
  47. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/sf/jgrapht/jgrapht/0.8.3/jgrapht-0.8.3.jar
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  58. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/io/scif/scifio-jai-imageio/1.1.0/scifio-jai-imageio-1.1.0.jar
  59. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/mapdb/mapdb/1.0.3/mapdb-1.0.3.jar
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  61. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/com/github/sbridges/object-inspector/object-inspector/0.1/object-inspector-0.1.jar
  62. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/iharder/base64/2.3.8/base64-2.3.8.jar
  63. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imagej/imagej-plugins-tools/0.3.0/imagej-plugins-tools-0.3.0.jar
  64. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imagej/imagej-plugins-uploader-ssh/0.3.0/imagej-plugins-uploader-ssh-0.3.0.jar
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  72. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/scijava/scripting-clojure/0.1.4/scripting-clojure-0.1.4.jar
  73. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/clojure/clojure/1.6.0/clojure-1.6.0.jar
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  149. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/com/fifesoft/languagesupport/2.5.8/languagesupport-2.5.8.jar
  150. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/mozilla/rhino/1.7.6/rhino-1.7.6.jar
  151. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/com/miglayout/miglayout/3.7.4/miglayout-3.7.4-swing.jar
  152. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/org/jhotdraw/jhotdraw/7.6.0/jhotdraw-7.6.0.jar
  153. Checking URL: file:/C:/Users/Jean-Yves/.m2/repository/net/imagej/imagej-ui-awt/0.3.0/imagej-ui-awt-0.3.0.jar
  154. Checking class loader: sun.misc.Launcher$ExtClassLoader@5f4da5c3
  155. Checking URL: file:/C:/Program%20Files/Java/jre1.8.0_91/lib/ext/access-bridge-64.jar
  156. Not Eclipse because first entry is: file:/C:/Program%20Files/Java/jre1.8.0_91/lib/ext/access-bridge-64.jar
  157. [DEBUG] Creating service: org.scijava.event.DefaultEventService
  158. [DEBUG] Creating service: org.scijava.log.StderrLogService
  159. [DEBUG] Created service 'org.scijava.log.StderrLogService' in 0 ms
  160. [DEBUG] Creating service: org.scijava.thread.DefaultThreadService
  161. [DEBUG] Created service 'org.scijava.thread.DefaultThreadService' in 1 ms
  162. [DEBUG] Created service 'org.scijava.event.DefaultEventService' in 13 ms
  163. [DEBUG] Creating service: net.imagej.legacy.LegacyConsoleService
  164. [DEBUG] Creating service: net.imagej.legacy.LegacyService
  165. Exception in thread "main" java.lang.IllegalArgumentException: Invalid service: net.imagej.legacy.LegacyConsoleService
  166. at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:280)
  167. at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:231)
  168. at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:194)
  169. at org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:166)
  170. at org.scijava.Context.<init>(Context.java:278)
  171. at org.scijava.Context.<init>(Context.java:234)
  172. at org.scijava.Context.<init>(Context.java:174)
  173. at org.scijava.Context.<init>(Context.java:160)
  174. at net.imagej.ImageJ.<init>(ImageJ.java:79)
  175. at fiji.plugin.mamut.LoadMamutAnnotationPlugin.main(LoadMamutAnnotationPlugin.java:124)
  176. Caused by: java.lang.IllegalArgumentException: Invalid service: net.imagej.legacy.LegacyService
  177. at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:280)
  178. at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:231)
  179. at org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:340)
  180. at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:269)
  181. ... 9 more
  182. Caused by: java.lang.ExceptionInInitializerError
  183. at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  184. at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
  185. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
  186. at java.lang.reflect.Constructor.newInstance(Unknown Source)
  187. at java.lang.Class.newInstance(Unknown Source)
  188. at org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:302)
  189. at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:269)
  190. ... 12 more
  191. Caused by: java.lang.RuntimeException: Found incompatible ij.IJ class
  192. at net.imagej.patcher.LegacyEnvironment.initialize(LegacyEnvironment.java:113)
  193. at net.imagej.patcher.LegacyEnvironment.applyPatches(LegacyEnvironment.java:495)
  194. at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:397)
  195. at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:376)
  196. at net.imagej.legacy.LegacyService.<clinit>(LegacyService.java:136)
  197. ... 19 more
  198. Caused by: java.lang.RuntimeException: Cannot load class: ij.ImageJ (loader: sun.misc.Launcher$AppClassLoader@73d16e93)
  199. It appears that this class was already defined in the class loader!
  200. Please make sure that you initialize the LegacyService before using
  201. any ImageJ 1.x class. You can do that by adding this static initializer:
  202.  
  203. static {
  204. LegacyInjector.preinit();
  205. }
  206.  
  207. To debug this issue, start the JVM with the option:
  208.  
  209. -javaagent:/C:/Users/Jean-Yves/.m2/repository/net/imagej/ij1-patcher/0.12.3/ij1-patcher-0.12.3.jar
  210.  
  211. To enforce pre-initialization, start the JVM with the option:
  212.  
  213. -javaagent:/C:/Users/Jean-Yves/.m2/repository/net/imagej/ij1-patcher/0.12.3/ij1-patcher-0.12.3.jar=init
  214.  
  215. at net.imagej.patcher.CodeHacker.javaAgentHint(CodeHacker.java:828)
  216. at net.imagej.patcher.CodeHacker.loadClass(CodeHacker.java:807)
  217. at net.imagej.patcher.CodeHacker.loadClasses(CodeHacker.java:855)
  218. at net.imagej.patcher.LegacyInjector.injectHooks(LegacyInjector.java:116)
  219. at net.imagej.patcher.LegacyEnvironment.initialize(LegacyEnvironment.java:101)
  220. ... 23 more
  221. Caused by: java.lang.LinkageError: loader (instance of sun/misc/Launcher$AppClassLoader): attempted duplicate class definition for name: "ij/ImageJ"
  222. at java.lang.ClassLoader.defineClass1(Native Method)
  223. at java.lang.ClassLoader.defineClass(Unknown Source)
  224. at java.lang.ClassLoader.defineClass(Unknown Source)
  225. at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  226. at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
  227. at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
  228. at java.lang.reflect.Method.invoke(Unknown Source)
  229. at javassist.ClassPool.toClass2(ClassPool.java:1133)
  230. at javassist.ClassPool.toClass(ClassPool.java:1114)
  231. at javassist.CtClass.toClass(CtClass.java:1300)
  232. at net.imagej.patcher.CodeHacker.loadClass(CodeHacker.java:801)
  233. ... 26 more
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