API tools faq
paste
Advertisement
Guest User

gromacs-4.6.7 + plumed-2.1.0 compilation error

a guest
Oct 21st, 2014
321
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 64.29 KB | None | 0 0
raw download clone embed print report
  1. [ 0%] Built target gromacs_include_links
  2. [ 48%] Built target gmx
  3. [ 48%] Built target template
  4. [ 68%] Built target md
  5. [ 73%] Built target gmxpreprocess
  6. [ 86%] Built target gmxana
  7. [ 87%] [ 87%] [ 87%] Built target g_x2top
  8. Built target g_luck
  9. Built target g_protonate
  10. [ 87%] Built target gmxcheck
  11. [ 87%] [ 87%] Built target gmxdump
  12. Built target grompp
  13. Linking C executable mdrun
  14. Scanning dependencies of target do_dssp
  15. [ 87%] Built target pdb2gmx
  16. [ 87%] [ 87%] Built target tpbconv
  17. Scanning dependencies of target editconf
  18. Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o
  19. Scanning dependencies of target eneconv
  20. [ 87%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o
  21. [ 87%] Linking C executable do_dssp
  22. Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o
  23. Linking C executable editconf
  24. Linking C executable eneconv
  25. [ 87%] Built target do_dssp
  26. Scanning dependencies of target g_anadock
  27. [ 87%] Built target editconf
  28. [ 87%] [ 87%] Built target eneconv
  29. Scanning dependencies of target g_anaeig
  30. Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o
  31. [ 87%] Scanning dependencies of target g_analyze
  32. Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o
  33. Linking C executable g_anadock
  34. [ 87%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o
  35. Linking C executable g_anaeig
  36. Linking C executable g_analyze
  37. [ 87%] Built target g_anadock
  38. [ 87%] Built target g_anaeig
  39. Scanning dependencies of target g_angle
  40. [ 87%] Scanning dependencies of target g_bar
  41. [ 87%] Built target g_analyze
  42. Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o
  43. [ 87%] Scanning dependencies of target g_bond
  44. Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o
  45. [ 87%] Linking C executable g_angle
  46. Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o
  47. Linking C executable g_bar
  48. Linking C executable g_bond
  49. [ 87%] Built target g_angle
  50. [ 87%] Built target g_bar
  51. Scanning dependencies of target g_bundle
  52. Scanning dependencies of target g_chi
  53. [ 88%] [ 88%] Built target g_bond
  54. [ 88%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o
  55. Scanning dependencies of target g_cluster
  56. Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o
  57. [ 88%] Linking C executable g_bundle
  58. Linking C executable g_chi
  59. Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o
  60. Linking C executable g_cluster
  61. [ 88%] Built target g_bundle
  62. [ 88%] Built target g_chi
  63. Scanning dependencies of target g_clustsize
  64. Scanning dependencies of target g_confrms
  65. [ 88%] [ 88%] Built target g_cluster
  66. [ 88%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o
  67. Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o
  68. Scanning dependencies of target g_covar
  69. [ 88%] Linking C executable g_clustsize
  70. Linking C executable g_confrms
  71. Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o
  72. Linking C executable g_covar
  73. [ 88%] [ 88%] Built target g_clustsize
  74. Built target g_confrms
  75. Scanning dependencies of target g_current
  76. Scanning dependencies of target g_density
  77. [ 88%] Built target g_covar
  78. [ 88%] [ 88%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o
  79. Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o
  80. Scanning dependencies of target g_densmap
  81. [ 88%] Linking C executable g_current
  82. Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o
  83. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Set_name(char const*)':
  84. Analysis.cpp:(.text._ZN3MPI8Datatype8Set_nameEPKc[MPI::Datatype::Set_name(char const*)]+0x9): undefined reference to `MPI_Type_set_name'
  85. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Set_attr(int, void const*)':
  86. Analysis.cpp:(.text._ZN3MPI8Datatype8Set_attrEiPKv[MPI::Datatype::Set_attr(int, void const*)]+0x9): undefined reference to `MPI_Type_set_attr'
  87. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_name(char*, int&) const':
  88. Analysis.cpp:(.text._ZNK3MPI8Datatype8Get_nameEPcRi[MPI::Datatype::Get_name(char*, int&) const]+0x9): undefined reference to `MPI_Type_get_name'
  89. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_envelope(int&, int&, int&, int&) const':
  90. Analysis.cpp:(.text._ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_[MPI::Datatype::Get_envelope(int&, int&, int&, int&) const]+0x9): undefined reference to `MPI_Type_get_envelope'
  91. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_contents(int, int, int, int*, long*, MPI::Datatype*) const':
  92. Analysis.cpp:(.text._ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_[MPI::Datatype::Get_contents(int, int, int, int*, long*, MPI::Datatype*) const]+0x69): undefined reference to `MPI_Type_get_contents'
  93. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_attr(int, void*) const':
  94. Analysis.cpp:(.text._ZNK3MPI8Datatype8Get_attrEiPv[MPI::Datatype::Get_attr(int, void*) const]+0xe): undefined reference to `MPI_Type_get_attr'
  95. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Delete_attr(int)':
  96. Analysis.cpp:(.text._ZN3MPI8Datatype11Delete_attrEi[MPI::Datatype::Delete_attr(int)]+0x9): undefined reference to `MPI_Type_delete_attr'
  97. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Dup() const':
  98. Analysis.cpp:(.text._ZNK3MPI8Datatype3DupEv[MPI::Datatype::Dup() const]+0x15): undefined reference to `MPI_Type_dup'
  99. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_subarray(int, int const*, int const*, int const*, int) const':
  100. Analysis.cpp:(.text._ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i[MPI::Datatype::Create_subarray(int, int const*, int const*, int const*, int) const]+0x29): undefined reference to `MPI_Type_create_subarray'
  101. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Pack_size(int, MPI::Comm const&) const':
  102. Analysis.cpp:(.text._ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE[MPI::Datatype::Pack_size(int, MPI::Comm const&) const]+0x17): undefined reference to `MPI_Pack_size'
  103. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Unpack(void const*, int, void*, int, int&, MPI::Comm const&) const':
  104. Analysis.cpp:(.text._ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE[MPI::Datatype::Unpack(void const*, int, void*, int, int&, MPI::Comm const&) const]+0x21): undefined reference to `MPI_Unpack'
  105. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Pack(void const*, int, void*, int, int&, MPI::Comm const&) const':
  106. Analysis.cpp:(.text._ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE[MPI::Datatype::Pack(void const*, int, void*, int, int&, MPI::Comm const&) const]+0x1e): undefined reference to `MPI_Pack'
  107. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Commit()':
  108. Analysis.cpp:(.text._ZN3MPI8Datatype6CommitEv[MPI::Datatype::Commit()]+0x9): undefined reference to `MPI_Type_commit'
  109. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_true_extent(long&, long&) const':
  110. Analysis.cpp:(.text._ZNK3MPI8Datatype15Get_true_extentERlS1_[MPI::Datatype::Get_true_extent(long&, long&) const]+0x9): undefined reference to `MPI_Type_get_true_extent'
  111. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_extent(long&, long&) const':
  112. Analysis.cpp:(.text._ZNK3MPI8Datatype10Get_extentERlS1_[MPI::Datatype::Get_extent(long&, long&) const]+0x9): undefined reference to `MPI_Type_get_extent'
  113. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Get_size() const':
  114. Analysis.cpp:(.text._ZNK3MPI8Datatype8Get_sizeEv[MPI::Datatype::Get_size() const]+0xe): undefined reference to `MPI_Type_size'
  115. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_resized(long, long) const':
  116. Analysis.cpp:(.text._ZNK3MPI8Datatype14Create_resizedEll[MPI::Datatype::Create_resized(long, long) const]+0x1b): undefined reference to `MPI_Type_create_resized'
  117. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_indexed_block(int, int, int const*) const':
  118. Analysis.cpp:(.text._ZNK3MPI8Datatype20Create_indexed_blockEiiPKi[MPI::Datatype::Create_indexed_block(int, int, int const*) const]+0x1c): undefined reference to `MPI_Type_create_indexed_block'
  119. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_hvector(int, int, long) const':
  120. Analysis.cpp:(.text._ZNK3MPI8Datatype14Create_hvectorEiil[MPI::Datatype::Create_hvector(int, int, long) const]+0x1c): undefined reference to `MPI_Type_create_hvector'
  121. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_hindexed(int, int const*, long const*) const':
  122. Analysis.cpp:(.text._ZNK3MPI8Datatype15Create_hindexedEiPKiPKl[MPI::Datatype::Create_hindexed(int, int const*, long const*) const]+0x1d): undefined reference to `MPI_Type_create_hindexed'
  123. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_indexed(int, int const*, int const*) const':
  124. Analysis.cpp:(.text._ZNK3MPI8Datatype14Create_indexedEiPKiS2_[MPI::Datatype::Create_indexed(int, int const*, int const*) const]+0x1d): undefined reference to `MPI_Type_indexed'
  125. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_vector(int, int, int) const':
  126. Analysis.cpp:(.text._ZNK3MPI8Datatype13Create_vectorEiii[MPI::Datatype::Create_vector(int, int, int) const]+0x1c): undefined reference to `MPI_Type_vector'
  127. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Datatype::Create_contiguous(int) const':
  128. Analysis.cpp:(.text._ZNK3MPI8Datatype17Create_contiguousEi[MPI::Datatype::Create_contiguous(int) const]+0x14): undefined reference to `MPI_Type_contiguous'
  129. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Prequest::Start()':
  130. Analysis.cpp:(.text._ZN3MPI8Prequest5StartEv[MPI::Prequest::Start()]+0x9): undefined reference to `MPI_Start'
  131. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Grequest::Complete()':
  132. Analysis.cpp:(.text._ZN3MPI8Grequest8CompleteEv[MPI::Grequest::Complete()]+0x9): undefined reference to `MPI_Grequest_complete'
  133. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Get_status() const':
  134. Analysis.cpp:(.text._ZNK3MPI7Request10Get_statusEv[MPI::Request::Get_status() const]+0x13): undefined reference to `MPI_Request_get_status'
  135. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Get_status(MPI::Status&) const':
  136. Analysis.cpp:(.text._ZNK3MPI7Request10Get_statusERNS_6StatusE[MPI::Request::Get_status(MPI::Status&) const]+0x1d): undefined reference to `MPI_Request_get_status'
  137. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Cancel() const':
  138. Analysis.cpp:(.text._ZNK3MPI7Request6CancelEv[MPI::Request::Cancel() const]+0x9): undefined reference to `MPI_Cancel'
  139. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Free()':
  140. Analysis.cpp:(.text._ZN3MPI7Request4FreeEv[MPI::Request::Free()]+0x9): undefined reference to `MPI_Request_free'
  141. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Test()':
  142. Analysis.cpp:(.text._ZN3MPI7Request4TestEv[MPI::Request::Test()]+0x13): undefined reference to `MPI_Test'
  143. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Test(MPI::Status&)':
  144. Analysis.cpp:(.text._ZN3MPI7Request4TestERNS_6StatusE[MPI::Request::Test(MPI::Status&)]+0x12): undefined reference to `MPI_Test'
  145. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Wait()':
  146. Analysis.cpp:(.text._ZN3MPI7Request4WaitEv[MPI::Request::Wait()]+0xe): undefined reference to `MPI_Wait'
  147. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Request::Wait(MPI::Status&)':
  148. Analysis.cpp:(.text._ZN3MPI7Request4WaitERNS_6StatusE[MPI::Request::Wait(MPI::Status&)]+0xd): undefined reference to `MPI_Wait'
  149. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intercomm::Clone() const':
  150. Analysis.cpp:(.text._ZNK3MPI9Intercomm5CloneEv[MPI::Intercomm::Clone() const]+0xe): undefined reference to `MPI_Comm_dup'
  151. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Is_inter() const':
  152. Analysis.cpp:(.text._ZNK3MPI4Comm8Is_interEv[MPI::Comm::Is_inter() const]+0xe): undefined reference to `MPI_Comm_test_inter'
  153. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Map(int, int const*, bool const*) const':
  154. Analysis.cpp:(.text._ZNK3MPI8Cartcomm3MapEiPKiPKb[MPI::Cartcomm::Map(int, int const*, bool const*) const]+0x58): undefined reference to `MPI_Cart_map'
  155. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Get_dim() const':
  156. Analysis.cpp:(.text._ZNK3MPI8Cartcomm7Get_dimEv[MPI::Cartcomm::Get_dim() const]+0xe): undefined reference to `MPI_Cartdim_get'
  157. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_topology() const':
  158. Analysis.cpp:(.text._ZNK3MPI4Comm12Get_topologyEv[MPI::Comm::Get_topology() const]+0xe): undefined reference to `MPI_Topo_test'
  159. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Shift(int, int, int&, int&) const':
  160. Analysis.cpp:(.text._ZNK3MPI8Cartcomm5ShiftEiiRiS1_[MPI::Cartcomm::Shift(int, int, int&, int&) const]+0x9): undefined reference to `MPI_Cart_shift'
  161. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Get_coords(int, int, int*) const':
  162. Analysis.cpp:(.text._ZNK3MPI8Cartcomm10Get_coordsEiiPi[MPI::Cartcomm::Get_coords(int, int, int*) const]+0x9): undefined reference to `MPI_Cart_coords'
  163. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Get_cart_rank(int const*) const':
  164. Analysis.cpp:(.text._ZNK3MPI8Cartcomm13Get_cart_rankEPKi[MPI::Cartcomm::Get_cart_rank(int const*) const]+0xe): undefined reference to `MPI_Cart_rank'
  165. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const':
  166. Analysis.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const]+0x6d): undefined reference to `MPI_Cart_get'
  167. Analysis.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const]+0xad): undefined reference to `MPI_Cart_get'
  168. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Graphcomm::Map(int, int const*, int const*) const':
  169. Analysis.cpp:(.text._ZNK3MPI9Graphcomm3MapEiPKiS2_[MPI::Graphcomm::Map(int, int const*, int const*) const]+0xe): undefined reference to `MPI_Graph_map'
  170. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Graphcomm::Get_neighbors(int, int, int*) const':
  171. Analysis.cpp:(.text._ZNK3MPI9Graphcomm13Get_neighborsEiiPi[MPI::Graphcomm::Get_neighbors(int, int, int*) const]+0x9): undefined reference to `MPI_Graph_neighbors'
  172. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Graphcomm::Get_neighbors_count(int) const':
  173. Analysis.cpp:(.text._ZNK3MPI9Graphcomm19Get_neighbors_countEi[MPI::Graphcomm::Get_neighbors_count(int) const]+0xe): undefined reference to `MPI_Graph_neighbors_count'
  174. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Graphcomm::Get_topo(int, int, int*, int*) const':
  175. Analysis.cpp:(.text._ZNK3MPI9Graphcomm8Get_topoEiiPiS1_[MPI::Graphcomm::Get_topo(int, int, int*, int*) const]+0x9): undefined reference to `MPI_Graph_get'
  176. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Graphcomm::Get_dims(int*, int*) const':
  177. Analysis.cpp:(.text._ZNK3MPI9Graphcomm8Get_dimsEPiS1_[MPI::Graphcomm::Get_dims(int*, int*) const]+0x9): undefined reference to `MPI_Graphdims_get'
  178. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int, int*)':
  179. Analysis.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi[MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int, int*)]+0xae): undefined reference to `MPI_Comm_spawn_multiple'
  180. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int)':
  181. Analysis.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi[MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int)]+0xaa): undefined reference to `MPI_Comm_spawn_multiple'
  182. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int, int*) const':
  183. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi[MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int, int*) const]+0x38): undefined reference to `MPI_Comm_spawn'
  184. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int) const':
  185. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi[MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int) const]+0x37): undefined reference to `MPI_Comm_spawn'
  186. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Connect(char const*, MPI::Info const&, int) const':
  187. Analysis.cpp:(.text._ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi[MPI::Intracomm::Connect(char const*, MPI::Info const&, int) const]+0x1f): undefined reference to `MPI_Comm_connect'
  188. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Accept(char const*, MPI::Info const&, int) const':
  189. Analysis.cpp:(.text._ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi[MPI::Intracomm::Accept(char const*, MPI::Info const&, int) const]+0x1f): undefined reference to `MPI_Comm_accept'
  190. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const':
  191. Analysis.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const]+0x2d): undefined reference to `MPI_Graph_create'
  192. Analysis.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const]+0x38): undefined reference to `MPI::Comm::Comm()'
  193. Analysis.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const]+0x58): undefined reference to `MPI_Initialized'
  194. Analysis.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const]+0x6a): undefined reference to `ompi_mpi_comm_null'
  195. Analysis.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const]+0x79): undefined reference to `MPI_Topo_test'
  196. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const':
  197. Analysis.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const]+0x69): undefined reference to `MPI_Cart_create'
  198. Analysis.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const]+0x81): undefined reference to `MPI::Comm::Comm()'
  199. Analysis.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const]+0xa2): undefined reference to `MPI_Initialized'
  200. Analysis.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const]+0xb5): undefined reference to `ompi_mpi_comm_null'
  201. Analysis.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const]+0xc4): undefined reference to `MPI_Topo_test'
  202. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Create_intercomm(int, MPI::Comm const&, int, int) const':
  203. Analysis.cpp:(.text._ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii[MPI::Intracomm::Create_intercomm(int, MPI::Comm const&, int, int) const]+0x24): undefined reference to `MPI_Intercomm_create'
  204. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intercomm::Split(int, int) const':
  205. Analysis.cpp:(.text._ZNK3MPI9Intercomm5SplitEii[MPI::Intercomm::Split(int, int) const]+0x19): undefined reference to `MPI_Comm_split'
  206. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Create(MPI::Group const&) const':
  207. Analysis.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[MPI::Intracomm::Create(MPI::Group const&) const]+0x2d): undefined reference to `MPI_Comm_create'
  208. Analysis.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[MPI::Intracomm::Create(MPI::Group const&) const]+0x3c): undefined reference to `MPI::Comm::Comm()'
  209. Analysis.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[MPI::Intracomm::Create(MPI::Group const&) const]+0x5c): undefined reference to `MPI_Initialized'
  210. Analysis.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[MPI::Intracomm::Create(MPI::Group const&) const]+0x6a): undefined reference to `ompi_mpi_comm_null'
  211. Analysis.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[MPI::Intracomm::Create(MPI::Group const&) const]+0x7c): undefined reference to `MPI_Comm_test_inter'
  212. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intercomm::Create(MPI::Group const&) const':
  213. Analysis.cpp:(.text._ZNK3MPI9Intercomm6CreateERKNS_5GroupE[MPI::Intercomm::Create(MPI::Group const&) const]+0x1c): undefined reference to `MPI_Comm_create'
  214. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Exscan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const':
  215. Analysis.cpp:(.text._ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE[MPI::Intracomm::Exscan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const]+0x1f): undefined reference to `MPI_Exscan'
  216. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Scan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const':
  217. Analysis.cpp:(.text._ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE[MPI::Intracomm::Scan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const]+0x1f): undefined reference to `MPI_Scan'
  218. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intercomm::Get_remote_group() const':
  219. Analysis.cpp:(.text._ZNK3MPI9Intercomm16Get_remote_groupEv[MPI::Intercomm::Get_remote_group() const]+0x15): undefined reference to `MPI_Comm_remote_group'
  220. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intercomm::Get_remote_size() const':
  221. Analysis.cpp:(.text._ZNK3MPI9Intercomm15Get_remote_sizeEv[MPI::Intercomm::Get_remote_size() const]+0xe): undefined reference to `MPI_Comm_remote_size'
  222. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Delete_attr(int)':
  223. Analysis.cpp:(.text._ZN3MPI4Comm11Delete_attrEi[MPI::Comm::Delete_attr(int)]+0x9): undefined reference to `MPI_Attr_delete'
  224. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_attr(int, void*) const':
  225. Analysis.cpp:(.text._ZNK3MPI4Comm8Get_attrEiPv[MPI::Comm::Get_attr(int, void*) const]+0xe): undefined reference to `MPI_Attr_get'
  226. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Set_attr(int, void const*) const':
  227. Analysis.cpp:(.text._ZNK3MPI4Comm8Set_attrEiPKv[MPI::Comm::Set_attr(int, void const*) const]+0x9): undefined reference to `MPI_Attr_put'
  228. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_errhandler() const':
  229. Analysis.cpp:(.text._ZNK3MPI4Comm14Get_errhandlerEv[MPI::Comm::Get_errhandler() const]+0x15): undefined reference to `MPI_Comm_get_errhandler'
  230. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Set_errhandler(MPI::Errhandler const&) const':
  231. Analysis.cpp:(.text._ZNK3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE[MPI::Comm::Set_errhandler(MPI::Errhandler const&) const]+0xd): undefined reference to `MPI_Comm_set_errhandler'
  232. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Abort(int)':
  233. Analysis.cpp:(.text._ZN3MPI4Comm5AbortEi[MPI::Comm::Abort(int)]+0x9): undefined reference to `MPI_Abort'
  234. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Set_name(char const*)':
  235. Analysis.cpp:(.text._ZN3MPI4Comm8Set_nameEPKc[MPI::Comm::Set_name(char const*)]+0x9): undefined reference to `MPI_Comm_set_name'
  236. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_name(char*, int&) const':
  237. Analysis.cpp:(.text._ZNK3MPI4Comm8Get_nameEPcRi[MPI::Comm::Get_name(char*, int&) const]+0x9): undefined reference to `MPI_Comm_get_name'
  238. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Disconnect()':
  239. Analysis.cpp:(.text._ZN3MPI4Comm10DisconnectEv[MPI::Comm::Disconnect()]+0x9): undefined reference to `MPI_Comm_disconnect'
  240. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Reduce_scatter(void const*, void*, int*, MPI::Datatype const&, MPI::Op const&) const':
  241. Analysis.cpp:(.text._ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE[MPI::Comm::Reduce_scatter(void const*, void*, int*, MPI::Datatype const&, MPI::Op const&) const]+0x20): undefined reference to `MPI_Reduce_scatter'
  242. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Allreduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const':
  243. Analysis.cpp:(.text._ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE[MPI::Comm::Allreduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const]+0x1f): undefined reference to `MPI_Allreduce'
  244. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Reduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&, int) const':
  245. Analysis.cpp:(.text._ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi[MPI::Comm::Reduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&, int) const]+0x28): undefined reference to `MPI_Reduce'
  246. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Alltoallw(void const*, int const*, int const*, MPI::Datatype const*, void*, int const*, int const*, MPI::Datatype const*) const':
  247. Analysis.cpp:(.text._ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_[MPI::Comm::Alltoallw(void const*, int const*, int const*, MPI::Datatype const*, void*, int const*, int const*, MPI::Datatype const*) const]+0xbc): undefined reference to `MPI_Alltoallw'
  248. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Alltoallv(void const*, int const*, int const*, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const':
  249. Analysis.cpp:(.text._ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_[MPI::Comm::Alltoallv(void const*, int const*, int const*, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const]+0x40): undefined reference to `MPI_Alltoallv'
  250. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Alltoall(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const':
  251. Analysis.cpp:(.text._ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_[MPI::Comm::Alltoall(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const]+0x2b): undefined reference to `MPI_Alltoall'
  252. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Allgatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const':
  253. Analysis.cpp:(.text._ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_[MPI::Comm::Allgatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const]+0x35): undefined reference to `MPI_Allgatherv'
  254. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Allgather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const':
  255. Analysis.cpp:(.text._ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_[MPI::Comm::Allgather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const]+0x2b): undefined reference to `MPI_Allgather'
  256. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Scatterv(void const*, int const*, int const*, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const':
  257. Analysis.cpp:(.text._ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i[MPI::Comm::Scatterv(void const*, int const*, int const*, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const]+0x3e): undefined reference to `MPI_Scatterv'
  258. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Scatter(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const':
  259. Analysis.cpp:(.text._ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i[MPI::Comm::Scatter(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const]+0x33): undefined reference to `MPI_Scatter'
  260. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Gatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&, int) const':
  261. Analysis.cpp:(.text._ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i[MPI::Comm::Gatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&, int) const]+0x3d): undefined reference to `MPI_Gatherv'
  262. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Gather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const':
  263. Analysis.cpp:(.text._ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i[MPI::Comm::Gather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const]+0x33): undefined reference to `MPI_Gather'
  264. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Bcast(void*, int, MPI::Datatype const&, int) const':
  265. Analysis.cpp:(.text._ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi[MPI::Comm::Bcast(void*, int, MPI::Datatype const&, int) const]+0x1b): undefined reference to `MPI_Bcast'
  266. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Barrier() const':
  267. Analysis.cpp:(.text._ZNK3MPI4Comm7BarrierEv[MPI::Comm::Barrier() const]+0x9): undefined reference to `MPI_Barrier'
  268. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Free()':
  269. Analysis.cpp:(.text._ZN3MPI4Comm4FreeEv[MPI::Comm::Free()]+0x9): undefined reference to `MPI_Comm_free'
  270. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_rank() const':
  271. Analysis.cpp:(.text._ZNK3MPI4Comm8Get_rankEv[MPI::Comm::Get_rank() const]+0xe): undefined reference to `MPI_Comm_rank'
  272. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_size() const':
  273. Analysis.cpp:(.text._ZNK3MPI4Comm8Get_sizeEv[MPI::Comm::Get_size() const]+0xe): undefined reference to `MPI_Comm_size'
  274. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Get_group() const':
  275. Analysis.cpp:(.text._ZNK3MPI4Comm9Get_groupEv[MPI::Comm::Get_group() const]+0x15): undefined reference to `MPI_Comm_group'
  276. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int) const':
  277. Analysis.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii[MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int) const]+0x38): undefined reference to `MPI_Sendrecv_replace'
  278. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int, MPI::Status&) const':
  279. Analysis.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE[MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int, MPI::Status&) const]+0x3d): undefined reference to `MPI_Sendrecv_replace'
  280. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int) const':
  281. Analysis.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii[MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int) const]+0x56): undefined reference to `MPI_Sendrecv'
  282. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int, MPI::Status&) const':
  283. Analysis.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE[MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int, MPI::Status&) const]+0x5b): undefined reference to `MPI_Sendrecv'
  284. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Recv_init(void*, int, MPI::Datatype const&, int, int) const':
  285. Analysis.cpp:(.text._ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii[MPI::Comm::Recv_init(void*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Recv_init'
  286. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Rsend_init(void const*, int, MPI::Datatype const&, int, int) const':
  287. Analysis.cpp:(.text._ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii[MPI::Comm::Rsend_init(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Rsend_init'
  288. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Ssend_init(void const*, int, MPI::Datatype const&, int, int) const':
  289. Analysis.cpp:(.text._ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii[MPI::Comm::Ssend_init(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Ssend_init'
  290. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Bsend_init(void const*, int, MPI::Datatype const&, int, int) const':
  291. Analysis.cpp:(.text._ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii[MPI::Comm::Bsend_init(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Bsend_init'
  292. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Send_init(void const*, int, MPI::Datatype const&, int, int) const':
  293. Analysis.cpp:(.text._ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii[MPI::Comm::Send_init(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Send_init'
  294. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Probe(int, int) const':
  295. Analysis.cpp:(.text._ZNK3MPI4Comm5ProbeEii[MPI::Comm::Probe(int, int) const]+0x15): undefined reference to `MPI_Probe'
  296. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Probe(int, int, MPI::Status&) const':
  297. Analysis.cpp:(.text._ZNK3MPI4Comm5ProbeEiiRNS_6StatusE[MPI::Comm::Probe(int, int, MPI::Status&) const]+0x14): undefined reference to `MPI_Probe'
  298. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Iprobe(int, int) const':
  299. Analysis.cpp:(.text._ZNK3MPI4Comm6IprobeEii[MPI::Comm::Iprobe(int, int) const]+0x1b): undefined reference to `MPI_Iprobe'
  300. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Iprobe(int, int, MPI::Status&) const':
  301. Analysis.cpp:(.text._ZNK3MPI4Comm6IprobeEiiRNS_6StatusE[MPI::Comm::Iprobe(int, int, MPI::Status&) const]+0x1c): undefined reference to `MPI_Iprobe'
  302. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Irecv(void*, int, MPI::Datatype const&, int, int) const':
  303. Analysis.cpp:(.text._ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii[MPI::Comm::Irecv(void*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Irecv'
  304. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Irsend(void const*, int, MPI::Datatype const&, int, int) const':
  305. Analysis.cpp:(.text._ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii[MPI::Comm::Irsend(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Irsend'
  306. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Issend(void const*, int, MPI::Datatype const&, int, int) const':
  307. Analysis.cpp:(.text._ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii[MPI::Comm::Issend(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Issend'
  308. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Ibsend(void const*, int, MPI::Datatype const&, int, int) const':
  309. Analysis.cpp:(.text._ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii[MPI::Comm::Ibsend(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Ibsend'
  310. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Isend(void const*, int, MPI::Datatype const&, int, int) const':
  311. Analysis.cpp:(.text._ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii[MPI::Comm::Isend(void const*, int, MPI::Datatype const&, int, int) const]+0x2a): undefined reference to `MPI_Isend'
  312. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Rsend(void const*, int, MPI::Datatype const&, int, int) const':
  313. Analysis.cpp:(.text._ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii[MPI::Comm::Rsend(void const*, int, MPI::Datatype const&, int, int) const]+0x1e): undefined reference to `MPI_Rsend'
  314. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Ssend(void const*, int, MPI::Datatype const&, int, int) const':
  315. Analysis.cpp:(.text._ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii[MPI::Comm::Ssend(void const*, int, MPI::Datatype const&, int, int) const]+0x1e): undefined reference to `MPI_Ssend'
  316. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Bsend(void const*, int, MPI::Datatype const&, int, int) const':
  317. Analysis.cpp:(.text._ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii[MPI::Comm::Bsend(void const*, int, MPI::Datatype const&, int, int) const]+0x1e): undefined reference to `MPI_Bsend'
  318. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int) const':
  319. Analysis.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii[MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int) const]+0x26): undefined reference to `MPI_Recv'
  320. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int, MPI::Status&) const':
  321. Analysis.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE[MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int, MPI::Status&) const]+0x2b): undefined reference to `MPI_Recv'
  322. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Comm::Send(void const*, int, MPI::Datatype const&, int, int) const':
  323. Analysis.cpp:(.text._ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii[MPI::Comm::Send(void const*, int, MPI::Datatype const&, int, int) const]+0x1e): undefined reference to `MPI_Send'
  324. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Free()':
  325. Analysis.cpp:(.text._ZN3MPI5Group4FreeEv[MPI::Group::Free()]+0x9): undefined reference to `MPI_Group_free'
  326. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Range_excl(int, int const (*) [3]) const':
  327. Analysis.cpp:(.text._ZNK3MPI5Group10Range_exclEiPA3_Ki[MPI::Group::Range_excl(int, int const (*) [3]) const]+0x1a): undefined reference to `MPI_Group_range_excl'
  328. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Range_incl(int, int const (*) [3]) const':
  329. Analysis.cpp:(.text._ZNK3MPI5Group10Range_inclEiPA3_Ki[MPI::Group::Range_incl(int, int const (*) [3]) const]+0x1a): undefined reference to `MPI_Group_range_incl'
  330. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Excl(int, int const*) const':
  331. Analysis.cpp:(.text._ZNK3MPI5Group4ExclEiPKi[MPI::Group::Excl(int, int const*) const]+0x1a): undefined reference to `MPI_Group_excl'
  332. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Incl(int, int const*) const':
  333. Analysis.cpp:(.text._ZNK3MPI5Group4InclEiPKi[MPI::Group::Incl(int, int const*) const]+0x1a): undefined reference to `MPI_Group_incl'
  334. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Get_rank() const':
  335. Analysis.cpp:(.text._ZNK3MPI5Group8Get_rankEv[MPI::Group::Get_rank() const]+0xe): undefined reference to `MPI_Group_rank'
  336. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Group::Get_size() const':
  337. Analysis.cpp:(.text._ZNK3MPI5Group8Get_sizeEv[MPI::Group::Get_size() const]+0xe): undefined reference to `MPI_Group_size'
  338. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Op::Free()':
  339. Analysis.cpp:(.text._ZN3MPI2Op4FreeEv[MPI::Op::Free()]+0x9): undefined reference to `MPI_Op_free'
  340. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)':
  341. Analysis.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)]+0x21): undefined reference to `ompi_mpi_cxx_op_intercept'
  342. Analysis.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)]+0x26): undefined reference to `MPI_Op_create'
  343. Analysis.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)]+0x32): undefined reference to `ompi_op_set_cxx_callback'
  344. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Errhandler::Free()':
  345. Analysis.cpp:(.text._ZN3MPI10Errhandler4FreeEv[MPI::Errhandler::Free()]+0x9): undefined reference to `MPI_Errhandler_free'
  346. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Status::Set_cancelled(bool)':
  347. Analysis.cpp:(.text._ZN3MPI6Status13Set_cancelledEb[MPI::Status::Set_cancelled(bool)]+0xd): undefined reference to `MPI_Status_set_cancelled'
  348. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Status::Set_elements(MPI::Datatype const&, int)':
  349. Analysis.cpp:(.text._ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi[MPI::Status::Set_elements(MPI::Datatype const&, int)]+0xd): undefined reference to `MPI_Status_set_elements'
  350. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Status::Get_elements(MPI::Datatype const&) const':
  351. Analysis.cpp:(.text._ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE[MPI::Status::Get_elements(MPI::Datatype const&) const]+0x12): undefined reference to `MPI_Get_elements'
  352. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Status::Is_cancelled() const':
  353. Analysis.cpp:(.text._ZNK3MPI6Status12Is_cancelledEv[MPI::Status::Is_cancelled() const]+0xe): undefined reference to `MPI_Test_cancelled'
  354. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Status::Get_count(MPI::Datatype const&) const':
  355. Analysis.cpp:(.text._ZNK3MPI6Status9Get_countERKNS_8DatatypeE[MPI::Status::Get_count(MPI::Datatype const&) const]+0x12): undefined reference to `MPI_Get_count'
  356. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Set(char const*, char const*)':
  357. Analysis.cpp:(.text._ZN3MPI4Info3SetEPKcS2_[MPI::Info::Set(char const*, char const*)]+0x9): undefined reference to `MPI_Info_set'
  358. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Get_valuelen(char const*, int&) const':
  359. Analysis.cpp:(.text._ZNK3MPI4Info12Get_valuelenEPKcRi[MPI::Info::Get_valuelen(char const*, int&) const]+0xe): undefined reference to `MPI_Info_get_valuelen'
  360. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Get_nthkey(int, char*) const':
  361. Analysis.cpp:(.text._ZNK3MPI4Info10Get_nthkeyEiPc[MPI::Info::Get_nthkey(int, char*) const]+0x9): undefined reference to `MPI_Info_get_nthkey'
  362. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Get_nkeys() const':
  363. Analysis.cpp:(.text._ZNK3MPI4Info9Get_nkeysEv[MPI::Info::Get_nkeys() const]+0xe): undefined reference to `MPI_Info_get_nkeys'
  364. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Get(char const*, int, char*) const':
  365. Analysis.cpp:(.text._ZNK3MPI4Info3GetEPKciPc[MPI::Info::Get(char const*, int, char*) const]+0xe): undefined reference to `MPI_Info_get'
  366. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Free()':
  367. Analysis.cpp:(.text._ZN3MPI4Info4FreeEv[MPI::Info::Free()]+0x9): undefined reference to `MPI_Info_free'
  368. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Dup() const':
  369. Analysis.cpp:(.text._ZNK3MPI4Info3DupEv[MPI::Info::Dup() const]+0x15): undefined reference to `MPI_Info_dup'
  370. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Info::Delete(char const*)':
  371. Analysis.cpp:(.text._ZN3MPI4Info6DeleteEPKc[MPI::Info::Delete(char const*)]+0x9): undefined reference to `MPI_Info_delete'
  372. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Set_name(char const*)':
  373. Analysis.cpp:(.text._ZN3MPI3Win8Set_nameEPKc[MPI::Win::Set_name(char const*)]+0x9): undefined reference to `MPI_Win_set_name'
  374. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Set_attr(int, void const*)':
  375. Analysis.cpp:(.text._ZN3MPI3Win8Set_attrEiPKv[MPI::Win::Set_attr(int, void const*)]+0x9): undefined reference to `MPI_Win_set_attr'
  376. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Get_name(char*, int&) const':
  377. Analysis.cpp:(.text._ZNK3MPI3Win8Get_nameEPcRi[MPI::Win::Get_name(char*, int&) const]+0x9): undefined reference to `MPI_Win_get_name'
  378. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Delete_attr(int)':
  379. Analysis.cpp:(.text._ZN3MPI3Win11Delete_attrEi[MPI::Win::Delete_attr(int)]+0x9): undefined reference to `MPI_Win_delete_attr'
  380. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Call_errhandler(int) const':
  381. Analysis.cpp:(.text._ZNK3MPI3Win15Call_errhandlerEi[MPI::Win::Call_errhandler(int) const]+0x9): undefined reference to `MPI_Win_call_errhandler'
  382. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Wait() const':
  383. Analysis.cpp:(.text._ZNK3MPI3Win4WaitEv[MPI::Win::Wait() const]+0x9): undefined reference to `MPI_Win_wait'
  384. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Unlock(int) const':
  385. Analysis.cpp:(.text._ZNK3MPI3Win6UnlockEi[MPI::Win::Unlock(int) const]+0xe): undefined reference to `MPI_Win_unlock'
  386. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Test() const':
  387. Analysis.cpp:(.text._ZNK3MPI3Win4TestEv[MPI::Win::Test() const]+0xe): undefined reference to `MPI_Win_test'
  388. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Start(MPI::Group const&, int) const':
  389. Analysis.cpp:(.text._ZNK3MPI3Win5StartERKNS_5GroupEi[MPI::Win::Start(MPI::Group const&, int) const]+0x12): undefined reference to `MPI_Win_start'
  390. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Put(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const':
  391. Analysis.cpp:(.text._ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_[MPI::Win::Put(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const]+0x35): undefined reference to `MPI_Put'
  392. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Post(MPI::Group const&, int) const':
  393. Analysis.cpp:(.text._ZNK3MPI3Win4PostERKNS_5GroupEi[MPI::Win::Post(MPI::Group const&, int) const]+0x12): undefined reference to `MPI_Win_post'
  394. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Lock(int, int, int) const':
  395. Analysis.cpp:(.text._ZNK3MPI3Win4LockEiii[MPI::Win::Lock(int, int, int) const]+0x12): undefined reference to `MPI_Win_lock'
  396. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Get_group() const':
  397. Analysis.cpp:(.text._ZNK3MPI3Win9Get_groupEv[MPI::Win::Get_group() const]+0x15): undefined reference to `MPI_Win_get_group'
  398. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Get(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const':
  399. Analysis.cpp:(.text._ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_[MPI::Win::Get(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const]+0x35): undefined reference to `MPI_Get'
  400. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Fence(int) const':
  401. Analysis.cpp:(.text._ZNK3MPI3Win5FenceEi[MPI::Win::Fence(int) const]+0xe): undefined reference to `MPI_Win_fence'
  402. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Complete() const':
  403. Analysis.cpp:(.text._ZNK3MPI3Win8CompleteEv[MPI::Win::Complete() const]+0x9): undefined reference to `MPI_Win_complete'
  404. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Accumulate(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&, MPI::Op const&) const':
  405. Analysis.cpp:(.text._ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE[MPI::Win::Accumulate(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&, MPI::Op const&) const]+0x43): undefined reference to `MPI_Accumulate'
  406. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Get_errhandler() const':
  407. Analysis.cpp:(.text._ZNK3MPI3Win14Get_errhandlerEv[MPI::Win::Get_errhandler() const]+0x15): undefined reference to `MPI_Win_get_errhandler'
  408. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Win::Set_errhandler(MPI::Errhandler const&) const':
  409. Analysis.cpp:(.text._ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE[MPI::Win::Set_errhandler(MPI::Errhandler const&) const]+0xd): undefined reference to `MPI_Win_set_errhandler'
  410. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Graphcomm::Clone() const':
  411. Analysis.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[MPI::Graphcomm::Clone() const]+0x1b): undefined reference to `MPI_Comm_dup'
  412. Analysis.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[MPI::Graphcomm::Clone() const]+0x33): undefined reference to `MPI::Comm::Comm()'
  413. Analysis.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[MPI::Graphcomm::Clone() const]+0x54): undefined reference to `MPI_Initialized'
  414. Analysis.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[MPI::Graphcomm::Clone() const]+0x66): undefined reference to `ompi_mpi_comm_null'
  415. Analysis.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[MPI::Graphcomm::Clone() const]+0x75): undefined reference to `MPI_Topo_test'
  416. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Sub(bool const*)':
  417. Analysis.cpp:(.text._ZN3MPI8Cartcomm3SubEPKb[MPI::Cartcomm::Sub(bool const*)]+0x1d): undefined reference to `MPI_Cartdim_get'
  418. Analysis.cpp:(.text._ZN3MPI8Cartcomm3SubEPKb[MPI::Cartcomm::Sub(bool const*)]+0x5f): undefined reference to `MPI_Cart_sub'
  419. Analysis.cpp:(.text._ZN3MPI8Cartcomm3SubEPKb[MPI::Cartcomm::Sub(bool const*)]+0x77): undefined reference to `MPI::Comm::Comm()'
  420. Analysis.cpp:(.text._ZN3MPI8Cartcomm3SubEPKb[MPI::Cartcomm::Sub(bool const*)]+0x98): undefined reference to `MPI_Initialized'
  421. Analysis.cpp:(.text._ZN3MPI8Cartcomm3SubEPKb[MPI::Cartcomm::Sub(bool const*)]+0xab): undefined reference to `ompi_mpi_comm_null'
  422. Analysis.cpp:(.text._ZN3MPI8Cartcomm3SubEPKb[MPI::Cartcomm::Sub(bool const*)]+0xba): undefined reference to `MPI_Topo_test'
  423. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Cartcomm::Clone() const':
  424. Analysis.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[MPI::Cartcomm::Clone() const]+0x1b): undefined reference to `MPI_Comm_dup'
  425. Analysis.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[MPI::Cartcomm::Clone() const]+0x33): undefined reference to `MPI::Comm::Comm()'
  426. Analysis.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[MPI::Cartcomm::Clone() const]+0x54): undefined reference to `MPI_Initialized'
  427. Analysis.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[MPI::Cartcomm::Clone() const]+0x66): undefined reference to `ompi_mpi_comm_null'
  428. Analysis.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[MPI::Cartcomm::Clone() const]+0x75): undefined reference to `MPI_Topo_test'
  429. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intercomm::Merge(bool)':
  430. Analysis.cpp:(.text._ZN3MPI9Intercomm5MergeEb[MPI::Intercomm::Merge(bool)]+0x2c): undefined reference to `MPI_Intercomm_merge'
  431. Analysis.cpp:(.text._ZN3MPI9Intercomm5MergeEb[MPI::Intercomm::Merge(bool)]+0x3b): undefined reference to `MPI::Comm::Comm()'
  432. Analysis.cpp:(.text._ZN3MPI9Intercomm5MergeEb[MPI::Intercomm::Merge(bool)]+0x5b): undefined reference to `MPI_Initialized'
  433. Analysis.cpp:(.text._ZN3MPI9Intercomm5MergeEb[MPI::Intercomm::Merge(bool)]+0x69): undefined reference to `ompi_mpi_comm_null'
  434. Analysis.cpp:(.text._ZN3MPI9Intercomm5MergeEb[MPI::Intercomm::Merge(bool)]+0x7b): undefined reference to `MPI_Comm_test_inter'
  435. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Clone() const':
  436. Analysis.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[MPI::Intracomm::Clone() const]+0x20): undefined reference to `MPI_Comm_dup'
  437. Analysis.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[MPI::Intracomm::Clone() const]+0x3c): undefined reference to `MPI::Comm::Comm()'
  438. Analysis.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[MPI::Intracomm::Clone() const]+0x5d): undefined reference to `MPI_Initialized'
  439. Analysis.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[MPI::Intracomm::Clone() const]+0x6b): undefined reference to `ompi_mpi_comm_null'
  440. Analysis.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[MPI::Intracomm::Clone() const]+0x7d): undefined reference to `MPI_Comm_test_inter'
  441. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o: In function `MPI::Intracomm::Split(int, int) const':
  442. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[MPI::Intracomm::Split(int, int) const]+0x2a): undefined reference to `MPI_Comm_split'
  443. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[MPI::Intracomm::Split(int, int) const]+0x39): undefined reference to `MPI::Comm::Comm()'
  444. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[MPI::Intracomm::Split(int, int) const]+0x59): undefined reference to `MPI_Initialized'
  445. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[MPI::Intracomm::Split(int, int) const]+0x67): undefined reference to `ompi_mpi_comm_null'
  446. Analysis.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[MPI::Intracomm::Split(int, int) const]+0x79): undefined reference to `MPI_Comm_test_inter'
  447. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o:(.data.rel.ro._ZTVN3MPI3WinE[vtable for MPI::Win]+0x48): undefined reference to `MPI::Win::Free()'
  448. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/analysis/Analysis.o:(.data.rel.ro._ZTVN3MPI8DatatypeE[vtable for MPI::Datatype]+0x78): undefined reference to `MPI::Datatype::Free()'
  449. /scratch/lustre/homeLvyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Communicator()':
  450. Communicator.cpp:(.text+0x11): undefined reference to `ompi_mpi_comm_self'
  451. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Communicator()':
  452. Communicator.cpp:(.text+0x2b): undefined reference to `ompi_mpi_comm_self'
  453. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `ompi_datatype_t* PLMD::Communicator::getMPIType<float>()':
  454. Communicator.cpp:(.text+0x3d): undefined reference to `ompi_mpi_float'
  455. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `ompi_datatype_t* PLMD::Communicator::getMPIType<double>()':
  456. Communicator.cpp:(.text+0x45): undefined reference to `ompi_mpi_double'
  457. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `ompi_datatype_t* PLMD::Communicator::getMPIType<int>()':
  458. Communicator.cpp:(.text+0x4d): undefined reference to `ompi_mpi_int'
  459. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `ompi_datatype_t* PLMD::Communicator::getMPIType<char>()':
  460. Communicator.cpp:(.text+0x55): undefined reference to `ompi_mpi_char'
  461. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `ompi_datatype_t* PLMD::Communicator::getMPIType<unsigned int>()':
  462. Communicator.cpp:(.text+0x5d): undefined reference to `ompi_mpi_unsigned'
  463. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `ompi_datatype_t* PLMD::Communicator::getMPIType<unsigned long>()':
  464. Communicator.cpp:(.text+0x65): undefined reference to `ompi_mpi_unsigned_long'
  465. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::initialized()':
  466. Communicator.cpp:(.text+0x7c): undefined reference to `MPI_Initialized'
  467. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Split(int, int, PLMD::Communicator&) const':
  468. Communicator.cpp:(.text+0x9b): undefined reference to `MPI_Comm_split'
  469. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Sum(PLMD::Communicator::Data)':
  470. Communicator.cpp:(.text+0xde): undefined reference to `ompi_mpi_op_sum'
  471. Communicator.cpp:(.text+0xf1): undefined reference to `MPI_Allreduce'
  472. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Bcast(PLMD::Communicator::Data, int)':
  473. Communicator.cpp:(.text+0x158): undefined reference to `MPI_Bcast'
  474. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Barrier() const':
  475. Communicator.cpp:(.text+0x18c): undefined reference to `MPI_Barrier'
  476. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::~Communicator()':
  477. Communicator.cpp:(.text+0x1b4): undefined reference to `ompi_mpi_comm_self'
  478. Communicator.cpp:(.text+0x1bd): undefined reference to `ompi_mpi_comm_world'
  479. Communicator.cpp:(.text+0x1c8): undefined reference to `MPI_Comm_free'
  480. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::~Communicator()':
  481. Communicator.cpp:(.text+0x1f8): undefined reference to `ompi_mpi_comm_self'
  482. Communicator.cpp:(.text+0x201): undefined reference to `ompi_mpi_comm_world'
  483. Communicator.cpp:(.text+0x20c): undefined reference to `MPI_Comm_free'
  484. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::~Communicator()':
  485. Communicator.cpp:(.text+0x234): undefined reference to `ompi_mpi_comm_self'
  486. Communicator.cpp:(.text+0x23d): undefined reference to `ompi_mpi_comm_world'
  487. Communicator.cpp:(.text+0x248): undefined reference to `MPI_Comm_free'
  488. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Set_comm(ompi_communicator_t*)':
  489. Communicator.cpp:(.text+0x277): undefined reference to `ompi_mpi_comm_self'
  490. Communicator.cpp:(.text+0x283): undefined reference to `ompi_mpi_comm_world'
  491. Communicator.cpp:(.text+0x28e): undefined reference to `MPI_Comm_free'
  492. Communicator.cpp:(.text+0x29f): undefined reference to `MPI_Comm_dup'
  493. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Get_rank() const':
  494. Communicator.cpp:(.text+0x331): undefined reference to `MPI_Comm_rank'
  495. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Get_size() const':
  496. Communicator.cpp:(.text+0x363): undefined reference to `MPI_Comm_size'
  497. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Abort(int)':
  498. Communicator.cpp:(.text+0x3d7): undefined reference to `MPI_Abort'
  499. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Get_world()':
  500. Communicator.cpp:(.text+0x453): undefined reference to `ompi_mpi_comm_world'
  501. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Status::Get_count(ompi_datatype_t*) const':
  502. Communicator.cpp:(.text+0x652): undefined reference to `MPI_Get_count'
  503. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Isend(PLMD::Communicator::ConstData, int, int)':
  504. Communicator.cpp:(.text+0x893): undefined reference to `MPI_Isend'
  505. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Recv(PLMD::Communicator::Data, int, int, PLMD::Communicator::Status&)':
  506. Communicator.cpp:(.text+0xb0d): undefined reference to `MPI_Recv'
  507. Communicator.cpp:(.text+0xb2d): undefined reference to `MPI_Recv'
  508. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Request::wait(PLMD::Communicator::Status&)':
  509. Communicator.cpp:(.text+0xd48): undefined reference to `MPI_Wait'
  510. Communicator.cpp:(.text+0xd55): undefined reference to `MPI_Wait'
  511. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Allgather(PLMD::Communicator::ConstData, PLMD::Communicator::Data)':
  512. Communicator.cpp:(.text+0xfc9): undefined reference to `MPI_Allgather'
  513. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Allgatherv(PLMD::Communicator::ConstData, PLMD::Communicator::Data, int const*, int const*)':
  514. Communicator.cpp:(.text+0x1252): undefined reference to `MPI_Allgatherv'
  515. /scratch/lustre/home/vyra6599/bin/plumed-2.1.0/src/tools/Communicator.o: In function `PLMD::Communicator::Set_fcomm(void*)':
  516. Communicator.cpp:(.text+0x164e): undefined reference to `MPI_Comm_f2c'
  517. collect2: ld returned 1 exit status
  518. make[2]: *** [src/kernel/mdrun] Error 1
  519. make[1]: *** [src/kernel/CMakeFiles/mdrun.dir/all] Error 2
  520. make[1]: *** Waiting for unfinished jobs....
  521. [ 88%] Built target g_current
  522. [ 88%] Built target g_density
  523. [ 88%] Built target g_densmap
  524. make: *** [all] Error 2
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!