wget -q --user=xxx --password=xxx --xxxx
    xxxx://www.xxx.com/xxx/xxxxx/xxxx/list
    line_no=$(awk '{x++} END {print x}' /home/cmccabe/list) # count new files and store as variable
    if [[ -s /home/cmccabe/list ]]; then
    DATE=`date +%-m-%-d-%Y`
    mkdir -p /home/user/Desktop/xxx/xxx/$DATE/{example1,example2,example3} # make new directory and subfolders

Date - example1, example2, example3

IonXpress_001_R_2016_02_11_11_51_07_user_Proton-34-160210_Lurie_MedExome_Hi-Q_Auto_user_Proton-34-160210_Lurie_MedExome_Hi-Q_84.bam
IonXpress_002_R_2016_02_11_11_51_07_user_Proton-34-160210_Lurie_MedExome_Hi-Q_Auto_user_Proton-34-160210_Lurie_MedExome_Hi-Q_84.bam
IonXpress_003_R_2016_02_11_11_51_07_user_Proton-34-160210_Lurie_MedExome_Hi-Q_Auto_user_Proton-34-160210_Lurie_MedExome_Hi-Q_84.bam
TSVC_variants_IonXpress_001.vcf.gz
TSVC_variants_IonXpress_002.vcf.gz
TSVC_variants_IonXpress_003.vcf.gz

`Date - Identifier - example1, example2, example3
 2-13-2015 (main directory) - IonXpress_001 (identifier as a sub-directory within 2-13-2015) - example1, example2, example3 (all sub-directories within the identifier).